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IVF0023646 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023646
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionArabinogalactan protein 20
Genome locationtig00000267:8034..8748
RNA-Seq ExpressionIVF0023646
SyntenyIVF0023646
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133836.1 arabinogalactan protein 41 [Cucumis sativus]6.37e-3483.95Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        M S N T+RAFKALFT FSLIFFILSPLVDA    PAPAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]1.99e-3380.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASS  T+RAF +LFT F+LIFFI+SPLVDA + APAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]3.64e-3480.72Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASSN T+RAF  LFT F+LI FILSPLVDA  + PAPAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]4.88e-3480.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASSN T+RAF  LFT F+LI FILSPLVDA +  PAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]1.29e-3382.72Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        M SSN T+RAF  LFT F+LIFFILSPLVDA   APAPAPAP+SDGTSIDQGIAYVLMLVALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein1.4e-2483.95Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        M S N T+RAFKALFT FSLIFFILSPLVDA    PAPAPAPSSDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

A0A5D3D0D1 Arabinogalactan protein 201.8e-24100Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
        MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLT

A0A6J1D1D7 arabinogalactan peptide 20-like2.4e-2480.25Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASS  T+RAF +LFT F+LIFFI+SPLVDA + APAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like6.3e-2580.72Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASSN T+RAF  LFT F+LI FILSPLVDA  + PAPAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like7.0e-2478.31Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN
        MASSN T RAF  LFT F+LI FILSPL+DA  + P+PAPAPAP+SDGTSIDQG+AYVLMLVALVLTYLIHPLDAS   FFLN
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDA--AAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.2e-1463.51Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A + APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Q8L9T8 Arabinogalactan protein 412.6e-1269.35Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A + APAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 228.0e-0960.71Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + + +PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 203.7e-1460.81Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A + APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.5e-1563.51Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N  T      F +FS +F ++  L  A A + APAPAP+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT3G61640.1 arabinogalactan protein 202.6e-1560.81Show/hide
Query:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS
        MAS N       A+  +F+ +F ++SP   A A + APAP+P+SDGTSIDQGIAY+LM+VALVLTYLIHPLDAS
Subjt:  MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDAS

AT5G24105.1 arabinogalactan protein 411.9e-1369.35Show/hide
Query:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +R F  + TI S+IF IL P+  A A + APAPAP+SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  TRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 225.7e-1060.71Show/hide
Query:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH
        +  +F +I  IL P+  A + + +PAPAP+SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTTTCTCCACTCGTTGACGCCGCAGCACCTGCTCCCGC
TCCCGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGGATTGCGTACGTTTTGATGCTAGTGGCGTTGGTTCTCACGTATCTAATTCACCCTCTCGATGCAT
CTTTCTTACAATTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATATAAAAAACGGGAATCGCCACATTATCCTCCGCCCCACTACTCTCCTCTCCTTCTTCAAACCATTTGGATTTTGATCAGTGCTTCCACACAAATTCCCCTCCTTTTGG
AGAAGGAGAATTCGACCATCCATCAATGGCGTCTTCCAATCCTACTACTAGGGCTTTCAAAGCTCTCTTCACCATCTTCTCTCTCATCTTCTTCATTCTTTCTCCACTCG
TTGACGCCGCAGCACCTGCTCCCGCTCCCGCTCCCGCTCCTTCTAGCGACGGGACCTCCATTGATCAGGGGATTGCGTACGTTTTGATGCTAGTGGCGTTGGTTCTCACG
TATCTAATTCACCCTCTCGATGCATCTTTCTTACAATTTTTTCTGAATTGAATTGAATTCTTCTTCCTAGGATTGTAGCAATGTAGGCGTTGTTTGTGGACGTTTGAGAA
GGAACGAGACCCATTTTTTCTTCTCTCTTTTTGTGATAAAATCAAAAGTGTATATTTGGGTTCCACAGATTTTGATCAATTGCTCCATTTAATTCATTGTTTATTCGGTT
ACTTTTCTT
Protein sequenceShow/hide protein sequence
MASSNPTTRAFKALFTIFSLIFFILSPLVDAAAPAPAPAPAPSSDGTSIDQGIAYVLMLVALVLTYLIHPLDASFLQFFLN