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IVF0023667 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023667
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Genome locationchr05:13306027..13306182
RNA-Seq ExpressionIVF0023667
SyntenyIVF0023667
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051389.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]3.02e-2498.04Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
        MDPAKRKRQTKTMDPTKRNNKAKTMNPTKR+TPTKRNTPAKRKSPGCRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
KAA0060038.1 hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]5.56e-1679.25Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+PTKRN+ TKRN+P KR SPG  CRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR
TYK22248.1 Collagen triple helix repeat protein [Cucumis melo var. makuwa]5.20e-25100Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
        MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
TrEMBL top hitse value%identityAlignment
A0A5A7UD84 Collagen triple helix repeat protein2.0e-1698.04Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
        MDPAKRKRQTKTMDPTKRNNKAKTMNPTKR+TPTKRNTPAKRKSPGCRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
A0A5A7UXT0 Uncharacterized protein3.6e-1079.25Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR
        MDP KRK QTKTMDPTKRNN+AKTM+PTKRN+ TKRN+P KR SPG  CRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR
A0A5D3DFL7 Collagen triple helix repeat protein5.2e-17100Show/hide
Query:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
        MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
Subjt:  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGGCGAAGAGGAAGAGGCAGACGAAAACTATGGATCCAACGAAGAGGAACAATAAGGCAAAAACTATGAATCCGACGAAGAGGAACACTCCAACAAAGAGGAA
CACTCCAGCAAAGAGGAAGAGTCCGGGTTGTAGAGGAAGACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCGGCGAAGAGGAAGAGGCAGACGAAAACTATGGATCCAACGAAGAGGAACAATAAGGCAAAAACTATGAATCCGACGAAGAGGAACACTCCAACAAAGAGGAA
CACTCCAGCAAAGAGGAAGAGTCCGGGTTGTAGAGGAAGACGATGA
Protein sequenceShow/hide protein sequence
MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR