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IVF0023723 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023723
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr04:7740714..7741031
RNA-Seq ExpressionIVF0023723
SyntenyIVF0023723
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006545 - glycine biosynthetic process (biological process)
GO:0006567 - threonine catabolic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005829 - cytosol (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008732 - L-allo-threonine aldolase activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7022295.1 unnamed protein product [Microthlaspi erraticum]1.87e-3558.49Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M+  PVLALP+F + FVVE+DAS  G+GA+ M+N+RP+ +FS  L    + K +YE EL AIV AI+KWRPYLLGR+FIV TDQKSLKFL++QR ++ E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        Q+W+ K
Subjt:  QRWITK

CAA7023069.1 unnamed protein product [Microthlaspi erraticum]6.64e-3761.32Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M+  PVLALPNF++ FVVE+DAS  G+GA+ M+N+RP+ FFS  L+   + K +YE EL AIV AI+KWRPYLLGRRF+V TDQKSLKFLL+QR ++ + 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        Q+W+TK
Subjt:  QRWITK

KAA0036836.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.31e-66100Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ
        MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ

Query:  RWITK
        RWITK
Subjt:  RWITK

PKU59625.1 putative mitochondrial protein [Dendrobium catenatum]3.58e-3558.49Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M  VPVLALP+F + F+VETDAS  G+ A+ M++ +P+ +FSQ L    + K VYE EL AIV AI+KWRPYLLGR FIV TDQ+SLK+LL+QR++ +E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        QRW++K
Subjt:  QRWITK

PKU67757.1 hypothetical protein MA16_Dca013787 [Dendrobium catenatum]1.86e-3658.49Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M  +PVLALP+F + F+V+TDAS  G+GA+ M+N+RP+ +F Q LA   + K+VYE EL  IV AI KWRPYLLGR FIV TDQ+SLK+LL+QR++  E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        QRW++K
Subjt:  QRWITK

TrEMBL top hitse value%identityAlignment
A0A2I0X132 Putative mitochondrial protein5.5e-2962.26Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M+  PVLALPNFK+  VVETDAS +G+GA+ M+  RP+ F+SQ L+   K K+VYE EL AIV AI+KWRPYLLGRRF+V TDQ+SLK+LL+QR++  E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        QRW++K
Subjt:  QRWITK

A0A2I0X7V3 Putative mitochondrial protein2.5e-2963.21Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M  VPVLALPNF++ FVVETDAS  G+GA+ M+N RP+ +FSQ L+   + K+VYE EL AIV AI+KWRPYLLGR FIV TDQ+SLK+LL+QR++  E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        QRW++K
Subjt:  QRWITK

A0A5A7T3Z0 Retrotransposable element Tf21.0e-51100Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ
        MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQ

Query:  RWITK
        RWITK
Subjt:  RWITK

A0A6D2I8S0 Integrase catalytic domain-containing protein7.1e-2961.32Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M+  PVLALPNF++ FVVE+DAS  G+GA+ M+N+RP+ FFS  L+   + K +YE EL AIV AI+KWRPYLLGRRF+V TDQKSLKFLL+QR ++ + 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        Q+W+TK
Subjt:  QRWITK

A0A803QP41 Uncharacterized protein4.2e-2961.32Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        M  VP+LALP+F KPFVVETDAS  G+GA+ M+  RP+ +FSQ L P  + K++YE EL AIV A+ KWRPYLLGRRF+V TDQ+SLKFLL+QR++  E 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRWITK
        Q+W+ K
Subjt:  QRWITK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.2e-1136.27Show/hide
Query:  PVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWI
        P+L +P+F K F + TDAS+V +GA++ ++  PL + S+ L       +  E EL AIV+A + +R YLLGR F + +D + L +L + +    +  RW 
Subjt:  PVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWI

Query:  TK
         K
Subjt:  TK

P10394 Retrovirus-related Pol polyprotein from transposon 4121.3e-0835.11Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFL
        +I   +L  P+F K F + TDAS+   GA++      ++ P+ + S+A       K+  E EL AI +AI  +RPY+ G+ F V TD + L +L
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.9e-1039.39Show/hide
Query:  VLALPNFKKPFVVETDASEVGMGAIMENK-RPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW
        +L  P+FKKPF + TDAS  G+GA++  + RP+   S+ L  P +  A  E EL AIV+A+ K + +L G R I + TD + L F +  R    + +RW
Subjt:  VLALPNFKKPFVVETDASEVGMGAIMENK-RPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-1337.86Show/hide
Query:  MIQVPVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ
        +I+ P+L LP+F+K FV+ TDAS + +GA++ +N  P+ F S+ L       +  E EL AIV+A + +R YLLGR+F++ +D + L++L   +    + 
Subjt:  MIQVPVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQ

Query:  QRW
        +RW
Subjt:  QRW

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.1e-0734.95Show/hide
Query:  VLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQ
        +LA P F KPF + TDAS   +GA++        RP+ + S++L    +  A  E E+ AI++++   R YL G   I V TD + L F L  R    + 
Subjt:  VLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQ

Query:  QRW
        +RW
Subjt:  QRW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACT
TGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGG
GTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACT
TGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGG
GTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG
Protein sequenceShow/hide protein sequence
MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK