CuGenDBv2

Gene ID	IVF0023729
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	chr07:3958868..3959092
RNA-Seq Expression	IVF0023729
Synteny	IVF0023729
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0008289 - lipid binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR005953 - ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AFU95057.1 AtpH, partial [Turnera ulmifolia]

8.97e-35

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS+ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

KAF7075394.1 hypothetical protein CFC21_080174 [Triticum aestivum]

6.32e-35

93.24

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLI+ ASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRGTLFLSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

PNS95716.1 hypothetical protein POPTR_017G074500 [Populus trichocarpa]

4.44e-35

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFMKALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

QWW93015.1 ATP synthase CF0 subunit III [Cyathodium smaragdinum]

1.28e-34

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

YP_009925616.1 ATP synthase CF0 subunit III [Phlegmariurus carinatus]

1.28e-34

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

TrEMBL top hits

e value

%identity

Alignment

A0A0U2UJ76 ATP synthase subunit c, chloroplastic

3.4e-25

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

A0A218KG23 ATP synthase subunit c, chloroplastic

3.4e-25

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

A0A2K1X4K6 ATP synthase F0 sector subunit C

1.5e-25

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFMKALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

K4KL80 ATP synthase subunit c, chloroplastic (Fragment)

2.6e-25

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS+ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

U6A3L6 ATP synthase F0 sector subunit C

3.4e-25

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

SwissProt top hits

e value

%identity

Alignment

A8SE66 ATP synthase subunit c, chloroplastic

9.1e-28

93.24

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS+ASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

B0Z4N0 ATP synthase subunit c, chloroplastic

9.1e-28

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

B0Z4W4 ATP synthase subunit c, chloroplastic

9.1e-28

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

P62481 ATP synthase subunit c, chloroplastic

9.1e-28

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

Q6WQW2 ATP synthase subunit c, chloroplastic

9.1e-28

94.59

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPLIS ASVIAAGLAVGLASIGPGIGQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.1e-28

91.89

Show/hide

Query:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL
        MNPL+S ASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRGTL LSLAFM+ALTIYGLVVALAL
Subjt:  MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCCACTGATTTCTACCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGA
AGGGATCACGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTTCTTAGTCTGGCTTTTATGAAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCAC
TTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNPLISTASVIAAGLAVGLASIGPGIGQGTAAGQAVEGITRQPEAEGKIRGTLFLSLAFMKALTIYGLVVALAL

IVF0023729 (gene) of Melon (IVF77) v1 genome