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IVF0023743 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023743
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPseudoU_synth_1 domain-containing protein
Genome locationchr12:479941..480391
RNA-Seq ExpressionIVF0023743
SyntenyIVF0023743
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145230.1 putative tRNA pseudouridine synthase isoform X2 [Cucumis sativus]6.66e-2160.92Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ A    F            +   +++  LRIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

XP_008457308.1 PREDICTED: putative tRNA pseudouridine synthase [Cucumis melo]7.77e-2971.26Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAA    F            +   +++  LRIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

XP_031742713.1 putative tRNA pseudouridine synthase isoform X1 [Cucumis sativus]8.44e-2352.63Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG-----PHLCYSLF
        MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ A    F            +   +++  LRIGYVGTDYRG       L +  F
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG-----PHLCYSLF

Query:  LLTTPFFENSGLQI
          TT  F N  L++
Subjt:  LLTTPFFENSGLQI

XP_038894777.1 putative tRNA pseudouridine synthase isoform X4 [Benincasa hispida]8.03e-1956.32Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        M+VSSLRLPLSPWITK+SSSCF FPYP FV RT RL PTL  C +S+ A    F            +   +++  LRIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

XP_038894779.1 putative tRNA pseudouridine synthase isoform X5 [Benincasa hispida]7.96e-1956.32Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        M+VSSLRLPLSPWITK+SSSCF FPYP FV RT RL PTL  C +S+ A    F            +   +++  LRIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

TrEMBL top hitse value%identityAlignment
A0A0A0LVB6 Uncharacterized protein5.1e-3559.33Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRGPH---LCYSL---
        MSVSSLRLPLSPWITK+SSSCFRFP PVFV RTP LRP LL+ FSS+ A    F            +   +++  LRIGYVGTDYRGPH   L  SL   
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRGPH---LCYSL---

Query:  FLLTTPFFENS------GLQINATNCHIQVSFSLHYIRKIPVDGLTMPCP
         +  +PF  NS      G + NATNCHIQVSFSLHYIRKIP+DGLTM  P
Subjt:  FLLTTPFFENS------GLQINATNCHIQVSFSLHYIRKIPVDGLTMPCP

A0A1S3C5W1 putative tRNA pseudouridine synthase4.1e-2471.26Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAA    F            +   +++  LRIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

A0A6J1DMV6 putative tRNA pseudouridine synthase isoform X24.0e-1149.43Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        M+VSSLR PLSPW TK+SS+CFR PY  FV R+P LRP LL C SS +A                 +   +++  +RIGY GTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

A0A6J1HM83 putative tRNA pseudouridine synthase8.0e-1249.43Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        M+VSSLR PLSPW  K+S  CFRFPYP FV  T RL P LL C SS+ A                 +   +++  +RIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

A0A6J1I156 putative tRNA pseudouridine synthase4.2e-1351.72Show/hide
Query:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG
        M+VSSLR PLSPW TK+S  CFRFPYP FV  T RLRP LL C SS+ A                 +   +++  +RIGYVGTDYRG
Subjt:  MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAATCTTCATCTTCATGTTTTCGTTTCCCCTACCCTGTTTTCGTTCCCCGGACCCCTCGTCTTAG
GCCTACACTGCTCTACTGTTTCTCATCTGCTGCTGCTCCACCGATGCTTTTTCCACTCAGTGCGCTCCGGACCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAGAAGGT
CGTTTTTGCGAATCGGATATGTCGGGACTGATTATCGAGGTCCTCATTTATGTTACTCTCTGTTTCTCTTGACCACCCCGTTTTTTGAAAATTCAGGGCTACAAATCAAC
GCAACCAACTGTCACATCCAAGTAAGTTTTTCTCTACATTATATCAGGAAAATTCCTGTCGATGGATTGACCATGCCATGCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCTCTTCTTTGCGACTCCCACTTTCCCCATGGATAACCAAATCTTCATCTTCATGTTTTCGTTTCCCCTACCCTGTTTTCGTTCCCCGGACCCCTCGTCTTAG
GCCTACACTGCTCTACTGTTTCTCATCTGCTGCTGCTCCACCGATGCTTTTTCCACTCAGTGCGCTCCGGACCAGCTCCGGAAATGGCAAGCTTTCCGTAAGAAGAAGGT
CGTTTTTGCGAATCGGATATGTCGGGACTGATTATCGAGGTCCTCATTTATGTTACTCTCTGTTTCTCTTGACCACCCCGTTTTTTGAAAATTCAGGGCTACAAATCAAC
GCAACCAACTGTCACATCCAAGTAAGTTTTTCTCTACATTATATCAGGAAAATTCCTGTCGATGGATTGACCATGCCATGCCCCTGA
Protein sequenceShow/hide protein sequence
MSVSSLRLPLSPWITKSSSSCFRFPYPVFVPRTPRLRPTLLYCFSSAAAPPMLFPLSALRTSSGNGKLSVRRRSFLRIGYVGTDYRGPHLCYSLFLLTTPFFENSGLQIN
ATNCHIQVSFSLHYIRKIPVDGLTMPCP