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IVF0023750 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023750
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr06:18358742..18358915
RNA-Seq ExpressionIVF0023750
SyntenyIVF0023750
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035633.1 retrotransposon protein [Cucumis melo var. makuwa]3.40e-1168.18Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        +A SSRAP HVWTK+E+ TLVEC VDLV M DGN TMVR  ++T
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
KAA0037606.1 retrotransposon protein [Cucumis melo var. makuwa]2.63e-1188.24Show/hide
Query:  SSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
        SSRAPKHVWTKEE+GTLVEC VDLVSMR GN+TM
Subjt:  SSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
KAA0060654.1 retrotransposon protein [Cucumis melo var. makuwa]9.67e-16100Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
        IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
KAA0062979.1 retrotransposon protein [Cucumis melo var. makuwa]3.05e-1168.18Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        ++ S+ AP+HVWTKEE+GTLVEC ++LVSM D NR MVR GQVT
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
TYK04240.1 retrotransposon protein [Cucumis melo var. makuwa]4.25e-1372.73Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        ++ S+RA +HVWTKEE+GTLVEC ++LV MRDGNR MVRFGQVT
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
TrEMBL top hitse value%identityAlignment
A0A5A7T630 Retrotransposon protein4.9e-0888.24Show/hide
Query:  SSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
        SSRAPKHVWTKEE+GTLVEC VDLVSMR GN+TM
Subjt:  SSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
A0A5A7V026 Retrotransposon protein2.5e-12100Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
        IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTM
A0A5A7VBK0 Retrotransposon protein6.4e-0868.18Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        ++ S+ AP+HVWTKEE+GTLVEC ++LVSM D NR MVR GQVT
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
A0A5D3BYQ3 Retrotransposon protein5.3e-1072.73Show/hide
Query:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        ++ S+RA +HVWTKEE+GTLVEC ++LV MRDGNR MVRFGQVT
Subjt:  IAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT
A0A5D3CKW5 Retrotransposon protein1.4e-0762Show/hide
Query:  FVILSIAPSSRAPKHVWTK-EEKGTLVECSVDLVSMRDGNRTMVRFGQVT
        F    ++ S+RAP+HVWTK EE+GTLVEC ++LV++ DGNR MVR GQVT
Subjt:  FVILSIAPSSRAPKHVWTK-EEKGTLVECSVDLVSMRDGNRTMVRFGQVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCCATGAATTCTTTGTGGTTTGTCATTCTCAGTATAGCACCATCGTCGCGTGCCCCAAAGCATGTATGGACGAAGGAAGAGAAGGGCACTCTTGTAGAG
TGTTCAGTGGATTTGGTGTCCATGCGGGATGGAAATCGGACAATGGTACGTTTCGGCCAGGTTACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCCATGAATTCTTTGTGGTTTGTCATTCTCAGTATAGCACCATCGTCGCGTGCCCCAAAGCATGTATGGACGAAGGAAGAGAAGGGCACTCTTGTAGAG
TGTTCAGTGGATTTGGTGTCCATGCGGGATGGAAATCGGACAATGGTACGTTTCGGCCAGGTTACCTAG
Protein sequenceShow/hide protein sequence
MGSMNSLWFVILSIAPSSRAPKHVWTKEEKGTLVECSVDLVSMRDGNRTMVRFGQVT