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IVF0023755 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023755
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRibosomal protein S12
Genome locationchr05:20055857..20056183
RNA-Seq ExpressionIVF0023755
SyntenyIVF0023755
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]8.20e-5787.04Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.65e-5686.11Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQE+ VVL RGERVKDLP+VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

YP_009128437.1 ribosomal protein S12 [Ipomoea batatas]7.40e-5685.19Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        M SK+LN+E YEVKIS TVL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

YP_009409916.1 ribosomal protein S12 [Cressa cretica]4.01e-5585.19Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        M SK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HN QEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

YP_009456170.1 ribosomal protein S12 [Lagenaria siceraria]1.53e-5486.67Show/hide
Query:  KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIK
        K+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +K
Subjt:  KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIK

Query:  DRQQG
        DRQQG
Subjt:  DRQQG

TrEMBL top hitse value%identityAlignment
A0A0C5G6K8 Ribosomal protein S122.6e-4285.19Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        M SK+LN+E YEVKIS TVL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

A0A220NCX4 Ribosomal protein S124.4e-4285.19Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        M SK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HN QEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

A0A2I6C0D6 30S ribosomal protein S12, chloroplastic9.9e-4286.67Show/hide
Query:  KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIK
        K+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +K
Subjt:  KKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIK

Query:  DRQQG
        DRQQG
Subjt:  DRQQG

A0A6A5N1Q8 Uncharacterized protein2.7e-3983.33Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        MTSK+LNKESYEVKIS +VL SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEH VVL RG  VKDLP VRYHIVRGTL A+
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

A0A6J1F0L1 uncharacterized protein LOC1114383942.4e-4387.04Show/hide
Query:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV
        MTSK+LN+E YEVKIS TVLSSGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV
Subjt:  MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAV

Query:  EIKDRQQG
         +KDRQQG
Subjt:  EIKDRQQG

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic2.1e-3684.62Show/hide
Query:  TVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        T + SGSKGDLS+NFSTITPKKPNS L KVARVRLTSGF+ITAYIPGI HN QEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  TVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

A4QJV5 30S ribosomal protein S12-A, chloroplastic7.6e-3188Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

A4QJX7 30S ribosomal protein S12-B, chloroplastic8.9e-3280.95Show/hide
Query:  KGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        +G  +  +STITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  KGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

P52762 30S ribosomal protein S12, chloroplastic3.4e-3188Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDA E+KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

Q85X49 30S ribosomal protein S12, chloroplastic3.4e-3188Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDA E+KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.1e-1655.26Show/hide
Query:  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        ST TPKKPNS   K+A+VRL++   I A+IPG  HN QEHS VL RG RVKD P V+ H +RG  D + I  R++G
Subjt:  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

ATCG00065.1 ribosomal protein S12A5.4e-3288Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

ATCG00905.1 ribosomal protein S12C5.4e-3288Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

ATCG01230.1 ribosomal protein S12B5.4e-3288Show/hide
Query:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        TITPKKPNS L KVARVRLTSGF+ITAYIPGI HNLQEHSVVL RG RVKDLP VRYHIVRGTLDAV +KDRQQG
Subjt:  TITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG

ATMG00980.1 Ribosomal protein S12/S23 family protein1.1e-1655.26Show/hide
Query:  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG
        ST TPKKPNS   K+A+VRL++   I A+IPG  HN QEHS VL RG RVKD P V+ H +RG  D + I  R++G
Subjt:  STITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCC
CAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTG
TAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCGAAAAAATTGAACAAGGAGTCGTATGAGGTGAAAATCTCATATACGGTTCTATCGAGTGGCAGTAAGGGTGACTTATCTCTCAACTTTTCCACTATCACCCC
CAAAAAACCAAACTCTACCTTACATAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTAAAATCACTGCTTATATACCTGGTATTAGCCATAATTTACAAGAACATTCTG
TAGTCTTAAAAAGAGGGGAAAGGGTTAAGGATTTACCCGATGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGAAATAAAGGATCGTCAACAAGGGTGA
Protein sequenceShow/hide protein sequence
MTSKKLNKESYEVKISYTVLSSGSKGDLSLNFSTITPKKPNSTLHKVARVRLTSGFKITAYIPGISHNLQEHSVVLKRGERVKDLPDVRYHIVRGTLDAVEIKDRQQG