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IVF0023809 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023809
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60s ribosomal protein l2
Genome locationchr12:1049424..1049657
RNA-Seq ExpressionIVF0023809
SyntenyIVF0023809
Gene Ontology termsGO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031822.1 60s ribosomal protein l2 [Cucumis melo var. makuwa]6.03e-51100Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

KAA0032895.1 60s ribosomal protein l2 [Cucumis melo var. makuwa]1.27e-3783.12Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        +TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAHK P EREGL  RM MGAG FEKA ADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

KAA0051145.1 ribosomal protein L2 [Cucumis melo var. makuwa]1.14e-3175.68Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPAD
        MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   M MGAG FEKA AD
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPAD

THU42354.1 hypothetical protein C4D60_Mb00t00470 [Musa balbisiana]7.00e-1757.14Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        +TI+R SLSIPSHTGRE+                  +K LIGE G AH+AP EREGL  RM MGAG FEKA ADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

XP_030519441.1 LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia argentea]1.73e-1762.16Show/hide
Query:  RFSLSIPSHTGREVKWQGHMLVWLFVEYS-SHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        + SLSIPSHTGREVKWQG  +       S +H    L GE G AH+AP EREGL  RM MGAG FEKA ADSET
Subjt:  RFSLSIPSHTGREVKWQGHMLVWLFVEYS-SHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

TrEMBL top hitse value%identityAlignment
A0A1J6J9A5 60s ribosomal protein l2, mitochondrial3.4e-1257.14Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        +TIER SLSIPSHTG+E+                  +K LIGE G AH+AP EREGL  RM MGAG FEKA ADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

A0A4S8I504 Uncharacterized protein2.6e-1257.14Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        +TI+R SLSIPSHTGRE+                  +K LIGE G AH+AP EREGL  RM MGAG FEKA ADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

A0A5A7SUL2 60s ribosomal protein l25.2e-2983.12Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        +TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAHK P EREGL  RM MGAG FEKA ADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

A0A5D3BBV8 60s ribosomal protein l22.8e-38100Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET

A0A5D3BXG0 Ribosomal protein L2 (Mitochondrion)8.6e-2475.68Show/hide
Query:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPAD
        MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   M MGAG FEKA AD
Subjt:  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G07715.1 Nucleic acid-binding, OB-fold-like protein4.6e-0973.68Show/hide
Query:  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
        LIGE G  H+AP EREGL  RM MGAG FEKA ADSET
Subjt:  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAA
CAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTG
ACTCGGAGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAA
CAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTG
ACTCGGAGACCTAG
Protein sequenceShow/hide protein sequence
MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET