CuGenDBv2

Gene ID	IVF0023851
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	chr12:22674206..22675155
RNA-Seq Expression	IVF0023851
Synteny	IVF0023851
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

1.43e-60

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

6.53e-62

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_008440305.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo]

7.93e-63

100

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

4.42e-60

94.12

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAV+KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

2.29e-61

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

3.7e-46

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial

7.4e-47

100

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

7.4e-47

100

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

2.0e-44

93.14

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

9.0e-45

94.12

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAV+KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

2.6e-04

41.11

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Query:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   +   EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

1.7e-40

79.41

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK +DP V+AR E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGGCTACAAATAGCCTGAAGAGTATGATTGCCGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATC
TACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCGTATGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGCCTAGAACAAGAGC
GCTTGTCCAAGCTTGAAATGCTAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAG

mRNA sequence

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Protein sequence

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MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

IVF0023851 (gene) of Melon (IVF77) v1 genome