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IVF0023875 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023875
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionhistone deacetylase complex subunit SAP18
Genome locationtig00000267:561748..564189
RNA-Seq ExpressionIVF0023875
SyntenyIVF0023875
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049010.1 histone deacetylase complex subunit SAP18 [Cucumis melo var. makuwa]3.17e-10099.33Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV-KEVAPEARRRNAKLSF
        MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV KEVAPEARRRNAKLSF
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV-KEVAPEARRRNAKLSF

Query:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_004133896.1 histone deacetylase complex subunit SAP18 isoform X2 [Cucumis sativus]1.07e-10098.65Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_008438121.1 PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]4.52e-102100Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_031737715.1 histone deacetylase complex subunit SAP18 isoform X1 [Cucumis sativus]7.55e-9894.19Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLRE-------VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLRE       VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLRE-------VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]8.43e-9897.3Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGA PRA+HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGN RLDDSLAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

TrEMBL top hitse value%identityAlignment
A0A0A0L6C9 Uncharacterized protein3.4e-7798.65Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A1S3AVL4 histone deacetylase complex subunit SAP183.1e-78100Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A5A7U0S8 Histone deacetylase complex subunit SAP187.6e-7799.33Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF
        MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSF
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF

Query:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A5D3D2K7 Histone deacetylase complex subunit SAP183.1e-78100Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like1.2e-7495.95Show/hide
Query:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFV+REVGKTFSFGN R DD+LAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP184.3e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

O55128 Histone deacetylase complex subunit SAP185.7e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

O64644 Histone deacetylase complex subunit SAP181.4e-4868Show/hide
Query:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPR  +  PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G + +REVG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI

Q3T022 Histone deacetylase complex subunit SAP184.3e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

Q5RDT5 Histone deacetylase complex subunit SAP184.3e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P181.0e-4968Show/hide
Query:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPR  +  PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G + +REVG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI

AT2G45640.2 SIN3 associated polypeptide P184.7e-4766.67Show/hide
Query:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  G      PPR  +  PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGA-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G +    VG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAGAAGCTGAAGCACCAAGGAGGGCTTATGGCGCTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCTGTTGATCGAGAAAAGACTTGTCC
TTTGCTGCTTCGCGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATG
CTACTCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTCGGTTT
GTATTGAGAGAGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTTCAGATTGGAGATTACTTGGACGTGGCAAT
CATATAG
mRNA sequenceShow/hide mRNA sequence
GTTGAAACTTGAAGAATACTTCGAGAGAAATGGCGGGAGAAGCTGAAGCACCAAGGAGGGCTTATGGCGCTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTG
GAGCCTGTTGATCGAGAAAAGACTTGTCCTTTGCTGCTTCGCGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGA
TGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTTGCTT
TGGTTTATCCCGATAGACATGGTCGGTTTGTATTGAGAGAGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTT
CAGATTGGAGATTACTTGGACGTGGCAATCATATAGGGTATGTGGTGCGTTTATATACTAATAATTTGCCTATGGTGAAGAACAAAAAGAATGAGGATATTAACTTCAAT
CTTGTAATGTATATTCCATTTAAGAATTGGTCGAAAATCCTTTACCTTGTATGTTTTCTTCCCCTGTGCCATATGAGGTAGATCGTGATAGTCATTGTCACGTTCCTTTG
AGTTACCTTCTTGATGTATTGCATCAGATGAACCGGGCCATATAATAGAGTTTTCGTTGGGACGATAATGGTGGAACTATTTTAGGCCCTATGGTTTCATTAACATGAGT
TTTTCTTTACAAAAATCAAAGTCTTTGTTGCA
Protein sequenceShow/hide protein sequence
MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRF
VLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII