CuGenDBv2

Gene ID	IVF0023876
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Genome location	chr05:5894094..5894705
RNA-Seq Expression	IVF0023876
Synteny	IVF0023876
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025724.1 uncharacterized protein E6C27_scaffold653G00030 [Cucumis melo var. makuwa]

5.44e-115

90.64

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDL ASENSKTPIGAT MS CPLVTKASPQRVGGT+PITT EISHFC DNLISDLR+KTAITL ESLRQKII TPFERVSSL+PEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SNNLTFLKE+VDGYFQGVENHNQMRSSILLQSTKDAQLME KGFVKTLR+D+NRIL+ETS VQRRLARLSAKEAKLEAKLK VRTESTKLSG+ISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

KAA0026036.1 uncharacterized protein E6C27_scaffold581G00210 [Cucumis melo var. makuwa]

7.71e-91

76.85

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Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        M SPE LS SEN K PIGAT MST PLV KASPQRV G +PIT SEISHFCADNLISDL++KT ITLWESLRQKIIRT FERVS+LE EM KIF AI TS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SN+L FL+E+V GYFQGVENHNQM SSILLQSTKDAQLM+ KGFV+ LR+D+N ILE+TSIVQR LA+LSAKEAKLE KLK V  ES KL GIIS+NE+
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        +LK
Subjt:  ELK

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]

1.18e-125

100

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Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
        GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

TYK06155.1 uncharacterized protein E5676_scaffold287G00030 [Cucumis melo var. makuwa]

1.03e-115

91.13

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Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDL ASENSKTPIGAT MS CPLVTKASPQRVGGT+PITT EISHFC DNLISDLR+KTAITL ESLRQKIIRTPFERVSSL+PEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SNNLTFLKE+VDGYFQGVENHNQMRSSILLQSTKDAQLME KGFVKTLR+D+NRIL+ETS VQRRLARLSAKEAKLEAKLK VRTESTKLSG+ISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

TYK22840.1 uncharacterized protein E5676_scaffold115G00220 [Cucumis melo var. makuwa]

9.58e-92

77.34

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Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        M SPE LS SENSK PIGAT MST PLV KASPQRV G +PIT SEISHFCADNLISDL++KT ITLWESLRQKIIRT FERVS+LE EM KIF AI TS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SN+L FL+E+V GYFQGVENHNQM SSILLQSTKDAQLM+ KGFV+ LR+D+N ILE+TSIVQR LA+LSAKEAKLE KLK V  ES KL GIIS+NE+
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        +LK
Subjt:  ELK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJ85 Uncharacterized protein

7.4e-91

90.64

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDL ASENSKTPIGAT MS CPLVTKASPQRVGGT+PITT EISHFC DNLISDLR+KTAITL ESLRQKII TPFERVSSL+PEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SNNLTFLKE+VDGYFQGVENHNQMRSSILLQSTKDAQLME KGFVKTLR+D+NRIL+ETS VQRRLARLSAKEAKLEAKLK VRTESTKLSG+ISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

A0A5A7SJR1 Uncharacterized protein

9.1e-73

76.85

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        M SPE LS SEN K PIGAT MST PLV KASPQRV G +PIT SEISHFCADNLISDL++KT ITLWESLRQKIIRT FERVS+LE EM KIF AI TS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SN+L FL+E+V GYFQGVENHNQM SSILLQSTKDAQLM+ KGFV+ LR+D+N ILE+TSIVQR LA+LSAKEAKLE KLK V  ES KL GIIS+NE+
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        +LK
Subjt:  ELK

A0A5A7U4C3 Uncharacterized protein

3.2e-102

100

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
        GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

A0A5D3C453 Uncharacterized protein

8.8e-92

91.13

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        MASPEDL ASENSKTPIGAT MS CPLVTKASPQRVGGT+PITT EISHFC DNLISDLR+KTAITL ESLRQKIIRTPFERVSSL+PEMRKIFAAIATS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SNNLTFLKE+VDGYFQGVENHNQMRSSILLQSTKDAQLME KGFVKTLR+D+NRIL+ETS VQRRLARLSAKEAKLEAKLK VRTESTKLSG+ISKNEI
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        ELK
Subjt:  ELK

A0A5D3DHK0 Uncharacterized protein

1.8e-73

77.34

Show/hide

Query:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS
        M SPE LS SENSK PIGAT MST PLV KASPQRV G +PIT SEISHFCADNLISDL++KT ITLWESLRQKIIRT FERVS+LE EM KIF AI TS
Subjt:  MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATS

Query:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI
         SN+L FL+E+V GYFQGVENHNQM SSILLQSTKDAQLM+ KGFV+ LR+D+N ILE+TSIVQR LA+LSAKEAKLE KLK V  ES KL GIIS+NE+
Subjt:  GSNNLTFLKEIVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEI

Query:  ELK
        +LK
Subjt:  ELK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGAGCCCAGAAGACCTTTCTGCAAGTGAAAACTCTAAAACTCCTATAGGTGCAACTATTATGTCAACCTGTCCTCTTGTGACCAAGGCATCCCCTCAACGAGTAGG
AGGAACAGAGCCTATCACAACTTCTGAGATTTCTCATTTTTGTGCAGACAACCTAATTTCTGATCTCCGACAAAAAACTGCCATAACTTTGTGGGAAAGCTTACGACAGA
AGATCATTCGTACCCCTTTTGAGCGAGTAAGTAGTCTTGAACCAGAAATGCGTAAGATCTTTGCTGCAATTGCGACTAGTGGCAGCAACAACCTTACCTTTTTAAAAGAA
ATTGTGGATGGTTACTTCCAAGGTGTAGAGAACCATAATCAAATGCGTTCCTCAATTTTGCTCCAGTCAACTAAGGATGCTCAATTAATGGAGGCGAAAGGTTTTGTGAA
GACTTTGCGAGTTGATGACAACCGTATATTGGAGGAGACAAGTATTGTCCAACGTCGCCTTGCACGACTATCTGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAACGG
TGCGGACAGAGTCCACCAAACTTTCTGGCATAATTTCTAAAAATGAGATAGAGCTGAAGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MASPEDLSASENSKTPIGATIMSTCPLVTKASPQRVGGTEPITTSEISHFCADNLISDLRQKTAITLWESLRQKIIRTPFERVSSLEPEMRKIFAAIATSGSNNLTFLKE
IVDGYFQGVENHNQMRSSILLQSTKDAQLMEAKGFVKTLRVDDNRILEETSIVQRRLARLSAKEAKLEAKLKTVRTESTKLSGIISKNEIELK

IVF0023876 (gene) of Melon (IVF77) v1 genome