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IVF0023879 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023879
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr07:8433018..8433416
RNA-Seq ExpressionIVF0023879
SyntenyIVF0023879
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]1.60e-5472.87Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM DSMK  Y ++
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]6.23e-5775.19Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]7.71e-3661.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP+DM+ GRSS+SSD R  SS QKRKR MQQ ET+DLI                             +QVIEL E IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        CIMI+NQKVSL RSFIKM DSM  AYCKV
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]8.06e-83100Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]2.11e-84100Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein9.9e-4475.19Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFP MC PRMNMSPKDMM GRS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATDQLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM D MK AYC+V
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

A0A5A7VAC3 Retrotransposon protein5.9e-65100Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

A0A5D3B9T0 Retrotransposon protein4.1e-4272.87Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP++MM GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        C+M+VNQKVSL RSFIKM DSMK  Y ++
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

A0A5D3BUJ4 Retrotransposon protein5.9e-65100Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
        CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

A0A5D3DLC6 Retrotransposon protein7.6e-2861.24Show/hide
Query:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK
        MEFPAMC PRMNMSP+DM+ GRSS+SSD R  SS QKRKR MQQ ET+DLI                             +QVIEL E IPNLT+AEKSK
Subjt:  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSK

Query:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV
        CIMI+NQKVSL RSFIKM DSM  AYCKV
Subjt:  CIMIVNQKVSLKRSFIKMFDSMKTAYCKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGGTAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAA
AAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGA
GCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCA
CTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGGTAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAA
AAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGA
GCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCA
CTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG
Protein sequenceShow/hide protein sequence
MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVS
LKRSFIKMFDSMKTAYCKVPPW