CuGenDBv2

Gene ID	IVF0023920
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein ROOT HAIR DEFECTIVE 3 homolog
Genome location	chr07:6221592..6222090
RNA-Seq Expression	IVF0023920
Synteny	IVF0023920
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0009536 - plastid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR008803 - RHD3/Sey1 IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR030386 - GB1/RHD3-type guanine nucleotide-binding (G) domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF2301062.1 hypothetical protein GH714_019756 [Hevea brasiliensis]

2.95e-23

90.2

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

KAG2321814.1 hypothetical protein Bca52824_015027 [Brassica carinata]

1.54e-22

88.24

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

MCH81464.1 ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]

1.78e-22

86.27

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

VFR00176.1 unnamed protein product [Cuscuta campestris]

2.97e-22

88.24

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS+LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

XP_038694472.1 protein ROOT HAIR DEFECTIVE 3-like [Tripterygium wilfordii]

4.35e-22

88.68

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        + RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

TrEMBL top hits

e value

%identity

Alignment

A0A103YNE3 Root hair defective 3 GTP-binding

8.6e-18

86.79

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        L RSQTTKGIW+ARCTGIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

A0A6J1HJ25 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-17

86.79

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

A0A6J1KDB3 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-17

86.79

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

A0A6J1KMA1 Protein ROOT HAIR DEFECTIVE 3 homolog

1.1e-17

86.79

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

A0A7J7C125 Protein ROOT HAIR DEFECTIVE 3 homolog

3.0e-18

88.68

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Query:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        + RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

SwissProt top hits

e value

%identity

Alignment

P93042 Protein ROOT HAIR DEFECTIVE 3

2.6e-19

86.27

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Q0JLS6 Protein ROOT HAIR DEFECTIVE 3

2.4e-17

82.35

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+A+   IEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 1

3.4e-19

82.35

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC G+EPCT+VMDLEGTDGRER  D+TAFEKQS+LFALA+
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 2

5.4e-17

78.43

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEP T+ MDLEGTDGRER  D+T FEKQS LFA+AV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 1

8.9e-20

88.24

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Arabidopsis top hits

e value

%identity

Alignment

AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)

6.3e-21

88.24

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)

1.8e-20

86.27

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)

7.0e-20

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Query:  SQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        SQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Subjt:  SQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)

3.8e-18

78.43

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Query:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV
        RSQTTKGIW+ARC GIEP T+ MDLEGTDGRER  D+T FEKQS LFA+AV
Subjt:  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Sequences

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CDS sequence

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ATGCCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCG
AGTAGTGGACAACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGCCGTGTAA

mRNA sequence

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ATGCCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCG
AGTAGTGGACAACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGCCGTGTAA

Protein sequence

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MPLSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

IVF0023920 (gene) of Melon (IVF77) v1 genome