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IVF0023954 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023954
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:19650083..19650417
RNA-Seq ExpressionIVF0023954
SyntenyIVF0023954
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2282875.1 hypothetical protein GH714_043359 [Hevea brasiliensis]2.70e-4063.96Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M + NF+QP IPRFD HYDHW+MLME          VV+S  AEPA G  L+D QK+EL+A KLKDLKAKNYLFQAID + LE I+CK+TSKQIWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQV
        K+QGN +AK+ 
Subjt:  KHQGNVKAKQV

XP_024030010.1 uncharacterized protein LOC112094115 [Morus notabilis]1.46e-4069.81Show/hide
Query:  FVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKKKHQGN
        FVQ  IPRFD HY+HW+MLME          VVES V EPA G +LS+TQ++ELEALKLKDLKAKNYLFQAID+ TLE I+ K+TSKQIWD MKKKHQGN
Subjt:  FVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKKKHQGN

Query:  VKAKQV
        VKA++V
Subjt:  VKAKQV

XP_025885564.1 uncharacterized protein LOC112941045 [Solanum lycopersicum]4.92e-4370Show/hide
Query:  TTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKKK
        ++DNFVQP IPRFD HYDHW+MLME          VVES VAEPA GA  ++ QK+E E LKLKDLKAKNYLFQAIDR+ LE I+CKETSK+IWD MKKK
Subjt:  TTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKKK

Query:  HQGNVKAKQV
        +QGNVKAK+V
Subjt:  HQGNVKAKQV

XP_027152457.1 uncharacterized protein LOC113752541 [Coffea eugenioides]1.65e-4268.47Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M  DNFVQP IPRFD HYDHW+MLME          V+ES VAEP  G ILS+ QK ELEALKLKDLKAKNYLFQAIDR  LE I+ K+TSKQ+WD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQV
        K+QGN KA++V
Subjt:  KHQGNVKAKQV

XP_034707079.1 uncharacterized protein LOC117930546 [Vitis riparia]1.68e-4066.06Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M +D FVQP IPRFD HYDHW+MLME          VV S VAEPA G +L+D QK ELEALKLKDLKAKNY FQAIDR+ LE I+CK+T+K IWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAK
        K+QG  +AK
Subjt:  KHQGNVKAK

TrEMBL top hitse value%identityAlignment
A0A1U7YQG9 uncharacterized protein LOC1045867023.6e-3063.64Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M TDNFVQP IPRFD HYDHW+MLME          VV + +AEPA G  ++D QK+ELE   LKDLKAKNYLFQAIDR+ LE I CK+TSK IWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQ
        K+QG+ +AK+
Subjt:  KHQGNVKAKQ

A0A1U8JQV0 uncharacterized protein LOC1079079076.2e-3062.39Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M ++NFVQ  IPRFD HYDHWNMLME          VV  ++ E A G ++SD Q++E++ALKLKDLKAKN+LFQAIDR+ LE I+CK+T KQIWDFMKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAK
        K+QG  KAK
Subjt:  KHQGNVKAK

A0A5C7ICJ8 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-2961.82Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M ++N+VQP IPRFD HYDHW+MLME          ++E  VAEPA   +L+ TQK+ELEALKLKDLKAKNYLFQAIDR+ LE I+ KE+SK+IWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQ
        K+QG+ + K+
Subjt:  KHQGNVKAKQ

A0A6A1WKP5 CCHC-type domain-containing protein6.2e-3060Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M ++NFVQP IPRFD HYDHW+MLME          +VE  VAEP PG+ ++D QK++LE  +LKDLKAKNYLFQAIDR+ LE I+CK+++K IWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQ
        K+QG+ +AK+
Subjt:  KHQGNVKAKQ

A0A6A6K386 Uncharacterized protein4.3e-3164.55Show/hide
Query:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK
        M + NF+QP IPRFD HYDHW+MLME          VV+S  AEPA G  L+D QK+EL+A KLKDLKAKNYLFQAID + LE I+CK+TSKQIWD MKK
Subjt:  MTTDNFVQPVIPRFDSHYDHWNMLME----------VVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKK

Query:  KHQGNVKAKQ
        K+QGN +AK+
Subjt:  KHQGNVKAKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTGATAACTTTGTCCAACCAGTAATTCCTCGCTTTGATAGTCATTATGACCATTGGAACATGCTAATGGAAGTTGTTGAATCTGAAGTAGCAGAACCTGCACC
TGGTGCAATATTGTCTGATACACAAAAGTCAGAATTGGAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTTTTCCAAGCAATTGATCGAGCAACTTTGGAAA
AAATTATTTGCAAAGAAACCTCCAAACAGATTTGGGACTTTATGAAAAAGAAGCATCAAGGGAACGTGAAGGCAAAGCAAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAACTGATAACTTTGTCCAACCAGTAATTCCTCGCTTTGATAGTCATTATGACCATTGGAACATGCTAATGGAAGTTGTTGAATCTGAAGTAGCAGAACCTGCACC
TGGTGCAATATTGTCTGATACACAAAAGTCAGAATTGGAAGCATTGAAGCTGAAGGACCTTAAAGCAAAAAACTATCTTTTCCAAGCAATTGATCGAGCAACTTTGGAAA
AAATTATTTGCAAAGAAACCTCCAAACAGATTTGGGACTTTATGAAAAAGAAGCATCAAGGGAACGTGAAGGCAAAGCAAGTGTAG
Protein sequenceShow/hide protein sequence
MTTDNFVQPVIPRFDSHYDHWNMLMEVVESEVAEPAPGAILSDTQKSELEALKLKDLKAKNYLFQAIDRATLEKIICKETSKQIWDFMKKKHQGNVKAKQV