CuGenDBv2

Gene ID	IVF0023975
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr09:6057812..6058309
RNA-Seq Expression	IVF0023975
Synteny	IVF0023975
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

1.43e-81

87.22

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EMWGPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP G YDRFDMGDGNE+FPPVYSQ IDLS
Subjt:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS

KAA0047166.1 retrotransposon protein [Cucumis melo var. makuwa]

1.49e-79

84.85

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        M EKL G QVRA TVI+CRIKTL+RTFQAI EM GP CSGFGWNDEEKCII EKELFDNWVRSHPA KGLLNKPFPYYDELTYVF RDRA G+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP GYDRFDMGDGNEEFPPVY+Q IDLS
Subjt:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDLS

KAA0055597.1 retrotransposon protein [Cucumis melo var. makuwa]

1.29e-79

84.73

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+R FQ I EMWGPACSGFGWNDEEKCII EK+LFDNWVRSHPATKGL NKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDL
        +GSNEP  YDRFD+GDGNEEFPPVYSQ IDL
Subjt:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDL

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]

3.33e-79

84.21

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EM GPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP G YDRFDMGDGNE+F PVYSQ +D+S
Subjt:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS

TYK10915.1 retrotransposon protein [Cucumis melo var. makuwa]

1.90e-79

84.96

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EM GPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP G YDRFDMGDGNE+FPPVYSQ +D+S
Subjt:  VGSNEPVG-YDRFDMGDGNEEFPPVYSQRIDLS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGP1 Retrotransposon protein

1.1e-63

87.22

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EMWGPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP  GYDRFDMGDGNE+FPPVYSQ IDLS
Subjt:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS

A0A5A7TRV1 Retrotransposon protein

1.0e-61

84.96

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EM GPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP  GYDRFDMGDGNE+FPPVYSQ +D+S
Subjt:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS

A0A5A7VES2 Retrotransposon protein

8.0e-62

85.71

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EM GPACSGFGWNDEEKCII EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP  GYDRFDMGDGNE+FPPVYSQ +D+S
Subjt:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS

A0A5D3BQP3 Retrotransposon protein

1.0e-61

84.73

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+R FQ I EMWGPACSGFGWNDEEKCII EK+LFDNWVRSHPATKGL NKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDL
        +GSNEP  YDRFD+GDGNEEFPPVYSQ IDL
Subjt:  VGSNEPVGYDRFDMGDGNEEFPPVYSQRIDL

A0A5D3CWL2 Retrotransposon protein

1.0e-61

84.96

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Query:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN
        MAEKL G QVRA TVI+CRIKTL+RTFQAI EM GPACSGFGWNDEEKCI+ EKELFDNWVRSHPA KGLLNKPFPYYDELTYVFGRDRATG+F ETF +
Subjt:  MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVN

Query:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS
        VGSNEP  GYDRFDMGDGNE+FPPVYSQ +D+S
Subjt:  VGSNEP-VGYDRFDMGDGNEEFPPVYSQRIDLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

5.2e-05

24.51

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Query:  VINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVNVGSN-----EPVGY
        V+  R KTL   F+++  +      GF W+D  + ++ +  ++D +++ HP ++    K  P Y +L  V+  D  +    E  ++ G +     E  GY
Subjt:  VINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVNVGSN-----EPVGY

Query:  DR
        +R
Subjt:  DR

AT4G02210.2 unknown protein

5.2e-05

24.51

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Query:  VINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVNVGSN-----EPVGY
        V+  R KTL   F+++  +      GF W+D  + ++ +  ++D +++ HP ++    K  P Y +L  V+  D  +    E  ++ G +     E  GY
Subjt:  VINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVNVGSN-----EPVGY

Query:  DR
        +R
Subjt:  DR

AT5G27260.1 unknown protein

5.6e-07

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Query:  RIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQ
        R+K L+  +Q+  ++     SGFGW+   K      E++ +++++HP  K L    F ++DEL  +FG   ATG+
Subjt:  RIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQ

Sequences

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CDS sequence

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ATGGCGGAAAAACTACATGGATCTCAGGTCCGAGCAATGACTGTAATTAATTGTAGAATTAAGACACTGGAGCGAACATTCCAGGCCATCACCGAAATGTGGGGGCCAGC
GTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATTATTACGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAACGAAAGGACTTCTGAACAAAC
CGTTCCCGTATTACGACGAACTTACATATGTGTTCGGTCGCGATAGGGCGACAGGTCAGTTCGTTGAGACATTCGTCAACGTAGGATCTAATGAGCCTGTCGGGTATGAC
AGATTTGATATGGGGGATGGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGAGGATTGACCTCTCGTAG

mRNA sequence

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Protein sequence

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MAEKLHGSQVRAMTVINCRIKTLERTFQAITEMWGPACSGFGWNDEEKCIITEKELFDNWVRSHPATKGLLNKPFPYYDELTYVFGRDRATGQFVETFVNVGSNEPVGYD
RFDMGDGNEEFPPVYSQRIDLS

IVF0023975 (gene) of Melon (IVF77) v1 genome