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IVF0023985 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0023985
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S16
Genome locationchr02:2141334..2143860
RNA-Seq ExpressionIVF0023985
SyntenyIVF0023985
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450874.1 PREDICTED: 30S ribosomal protein S16 [Cucumis melo]3.91e-92100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

XP_011659994.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus]3.69e-8595.2Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEV
        RPVDPLSGRFVTP KKPTD SNGE 
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEV

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]1.80e-8189.23Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRFVTPEK PTD S+ + G+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]9.24e-8288.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRF TP+K   DS++ + GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]3.79e-8392.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        R VDPLSGRFVTPEK PTDSS+G+ GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

TrEMBL top hitse value%identityAlignment
A0A0A0LZG2 Uncharacterized protein3.8e-6495.97Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGE
        RPVDPLSGRFVTP KKPTD SNGE
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGE

A0A1S3BQ70 30S ribosomal protein S161.3e-69100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

A0A5D3CDW9 30S ribosomal protein S161.3e-69100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial1.8e-6189.23Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRFVTPE KPTD S+ + G+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.0e-6188.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDPLSGRF TP+K   DS++ + GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

SwissProt top hitse value%identityAlignment
A4WNX7 30S ribosomal protein S162.7e-1954.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL
        M ++IRL+R G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+YWLS GAQP+D + R L  AGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL

O65686 30S ribosomal protein S16-1, chloroplastic2.2e-3253.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+KYWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

Q16AN8 30S ribosomal protein S167.2e-2054.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWL  GAQP+D + R+L  AGL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL

Q5LNF2 30S ribosomal protein S162.7e-1953.01Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ +D + R+L  AG++
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial7.4e-5776.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+KYWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDP++GR+V  E K  ++++ +  + D+
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 161.5e-3353.57Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+KYWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

AT5G56940.1 Ribosomal protein S16 family protein5.2e-5876.15Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+KYWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS
        RPVDP++GR+V  E K  ++++ +  + D+
Subjt:  RPVDPLSGRFVTPEKKPTDSSNGEVGDADS

ATCG00050.1 ribosomal protein S161.4e-0733.33Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       +N   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCT
AGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGC
AGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTC
GTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAG
mRNA sequenceShow/hide mRNA sequence
GTGAGAAGTGGAGGCGCCAGTTTCTGTTCTGTAATCTATCGTCATTTCAGTTTGGCGAATTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTC
GATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCC
TTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCG
AGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGA
AGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAGTTTTCTTTCAGAAGAATCTCGGGCTCTGGAATTATCATTCAAATGTGATTTCCAACTCATCCT
GTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCAAAGTAGTTTCAGTTTATTCTGGAAC
ATTAAAATGGAGTCTGTAGATATTATCAACGTCCAATCCTCCAGTACCAAGGCATAGTAGGGTTGTTGGACTGAGCTTATCTCACCGAAGACTAGCCATTACGTTGAGAA
AACATGACCTTGTTGTCTAATTTAAACATGATTAGATCTCTGTTTTGTTCTTTCTTTGTTATGTTATTTTGATTAAAATGAGAGAAATATTCATTTTGCTTTTCTAGTAG
CCAGATTCTGAAAACACCATCCTTTATCACTTTTTACTCATTTGATATTTATGTATACTGATTTGCTGAG
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRF
VTPEKKPTDSSNGEVGDADS