CuGenDBv2

Gene ID	IVF0024078
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	F-box protein SNE
Genome location	chr11:12941157..12941615
RNA-Seq Expression	IVF0024078
Synteny	IVF0024078
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

3.83e-105

99.34

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEQNEKKRKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

3.68e-103

97.37

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

6.62e-106

100

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

5.64e-98

92.11

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

3.03e-102

96.71

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

8.3e-79

97.37

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

6.8e-81

100

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

2.6e-80

99.34

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEQNEKKRKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

7.3e-75

92.11

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

7.3e-75

92.11

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Query:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

4.6e-10

33.91

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       ++ VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

2.1e-34

52.6

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Query:  IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL
        + + N K+++      F IND  D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.4e-11

30.6

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Query:  QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLG
        + N   +  E++     N D +++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++VV ALGG++RL+ + + P LS+  
Subjt:  QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLG

Query:  YSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR
             R  + +DE++L+LSL  + YYE+++ + R
Subjt:  YSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.0e-12

30.6

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Query:  QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLG
        + N   +  E++     N D +++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++VV ALGG++RL+ + + P LS+  
Subjt:  QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLG

Query:  YSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR
             R  + +DE++L+LSL  + YYE+++ + R
Subjt:  YSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.5e-35

52.6

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Query:  IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL
        + + N K+++      F IND  D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

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ATGCAGAAGAATCACATACCAGAGCAGAACGAGAAGAAACGGAAGTTCCTAATCAACGACGATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCT
CGGCGTTGCGACCTGTGTCTGCCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCAGTGA
AAACGGTGGTAGCGGCCTTGGGAGGGTACAAGAGGCTGTACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAG
GATGAGGTACAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTG
CAACACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

IVF0024078 (gene) of Melon (IVF77) v1 genome