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IVF0024124 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024124
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr12:10475892..10476170
RNA-Seq ExpressionIVF0024124
SyntenyIVF0024124
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059489.1 ribosomal protein L5 [Cucumis melo var. makuwa]4.94e-3268.18Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCS
        MP+TQF HP VKSG PTVSS C V V SLSIFG R   TS HTPGML  TFSQGIGRE SSLEG+L C+PK SK WPMLP +     S
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCS

KAA0061317.1 hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa]1.81e-2661.96Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        MP+TQF     K  P     F  VLV SLSIF  RT RTSTHT GMLP  F+QGIGRE SSLEGEL  DPKR K WPML  SGER   ++NH
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.94e-3470.65Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        MP++QF   G KS  PTVSS CFVLV +LSIF  RTPRTSTHT GMLPD FS+GIG+E SSLEGEL C+PKRSK W MLP S ERS  I+NH
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

TYK15439.1 uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]1.45e-3574.39Show/hide
Query:  VKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        VKSGPPTVSS C VLV  LSIFG   PRTSTHTPGMLPD FS GI RE  SLEGEL CDPKRS+ WPMLP SG+RS  ++NH
Subjt:  VKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]6.16e-3249.32Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQ-----------------------------------------------
        MPQTQF  PG KS PPTVS+ C VLVRSLSIFG  TPRTSTHTPGMLPDTFS+                                               
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQ-----------------------------------------------

Query:  -------GIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
               GIGRE SSLEGEL CDPK SK WPMLP  GERS   +NH
Subjt:  -------GIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

TrEMBL top hitse value%identityAlignment
A0A5A7V129 Ribosomal protein L5 (Mitochondrion)2.7e-2468.18Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCS
        MP+TQF HP VKSG PTVSS C V V SLSIFG R   TS HTPGML  TFSQGIGRE SSLEG+L C+PK SK WPMLP +     S
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCS

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein3.1e-2870.65Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        MP++QF   G KS  PTVSS CFVLV +LSIF  RTPRTSTHT GMLPD FS+GIG+E SSLEGEL C+PKRSK W MLP S ERS  I+NH
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

A0A5D3CZ27 ULP_PROTEASE domain-containing protein7.6e-2774.39Show/hide
Query:  VKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        VKSGPPTVSS C VLV  LSIFG   PRTSTHTPGMLPD FS GI RE  SLEGEL CDPKRS+ WPMLP SG+RS  ++NH
Subjt:  VKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

A0A5D3DFP2 Uncharacterized protein1.7e-2649.32Show/hide
Query:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQ-----------------------------------------------
        MPQTQF  PG KS PPTVS+ C VLVRSLSIFG  TPRTSTHTPGMLPDTFS+                                               
Subjt:  MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQ-----------------------------------------------

Query:  -------GIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
               GIGRE SSLEGEL CDPK SK WPMLP  GERS   +NH
Subjt:  -------GIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

A0A5D3DIF8 Gag/pol protein6.3e-2167.9Show/hide
Query:  KSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH
        K+   TVSS  F+LV SL IFG  TPRTSTHT  MLPD FSQGIGRE SSLEGELRCDPK  K WPML  SGE S  ++N+
Subjt:  KSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAGACACAGTTTCCTCATCCAGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCAGAAGTCTTTCGATCTTCGGGGTTCGTACTCC
GAGGACTTCAACCCACACTCCTGGAATGCTCCCTGATACGTTTTCTCAAGGTATAGGTCGGGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACGATCCA
AAACATGGCCAATGCTTCCAATGAGTGGTGAACGCTCGTGCAGCATCAAAAACCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAGACACAGTTTCCTCATCCAGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCAGAAGTCTTTCGATCTTCGGGGTTCGTACTCC
GAGGACTTCAACCCACACTCCTGGAATGCTCCCTGATACGTTTTCTCAAGGTATAGGTCGGGAAGTGAGCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACGATCCA
AAACATGGCCAATGCTTCCAATGAGTGGTGAACGCTCGTGCAGCATCAAAAACCACTAG
Protein sequenceShow/hide protein sequence
MPQTQFPHPGVKSGPPTVSSFCFVLVRSLSIFGVRTPRTSTHTPGMLPDTFSQGIGREVSSLEGELRCDPKRSKTWPMLPMSGERSCSIKNH