CuGenDBv2

Gene ID	IVF0024136
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr01:25156679..25157595
RNA-Seq Expression	IVF0024136
Synteny	IVF0024136
Gene Ontology terms	NA
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]

5.75e-135

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

KAA0038122.1 retrotransposon protein [Cucumis melo var. makuwa]

5.75e-135

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

KAA0051058.1 retrotransposon protein [Cucumis melo var. makuwa]

3.32e-134

74.82

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Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRS+NGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

KAA0051960.1 retrotransposon protein [Cucumis melo var. makuwa]

9.50e-134

74.45

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Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECL+ELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRT IEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

KAA0057083.1 retrotransposon protein [Cucumis melo var. makuwa]

5.75e-135

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2A6 Retrotransposon protein

5.1e-106

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

A0A5A7UME4 Retrotransposon protein

5.1e-106

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

A0A5D3CBF7 Retrotransposon protein

5.1e-106

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

A0A5D3DPR5 Retrotransposon protein

5.1e-106

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

E5GCB5 Retrotransposon protein

5.1e-106

75.18

Show/hide

Query:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI
        MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKI GSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW+DEKKCI
Subjt:  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCI

Query:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS
         AEKEVFDDW                                                              +  PGLNMSPDDLMETRTARVSERRNVS
Subjt:  FAEKEVFDDW--------------------------------------------------------------VKVPGLNMSPDDLMETRTARVSERRNVS

Query:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
        SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR
Subjt:  SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTGCCTCGTGGAGTTGGTCAATGCTGGTGGGTGGAGGTCCGACAA
TGGGACCTTTCGTCCCGGGTACTTAAATCAGTTGGCGAGAATGATGGCGTTCAAGATCTCAGGTTCTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGA
AGAGAATGTTTCACGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGGATGATGAAAAAAAATGCATCTTCGCTGAGAAAGAAGTCTTTGACGATTGG
GTAAAGGTTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGG
ACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACGTCAAGATGCTACCCAAA
CACGTCAAGAGATTGTTCGACATTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAAACGTCGATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWDDEKKCIFAEKEVFDDW
VKVPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRKRR

IVF0024136 (gene) of Melon (IVF77) v1 genome