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IVF0024139 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024139
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr05:3189086..3189585
RNA-Seq ExpressionIVF0024139
SyntenyIVF0024139
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032952.1 reverse transcriptase [Cucumis melo var. makuwa]2.45e-8984.38Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWA+PKSVLELRSFLGLANYY +FVEG SKRASPLTELLKKDVHW+WD ECQ            GPLLGIADVTKPFEVETD SDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAY+SRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+N+ATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]1.31e-8787.5Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWA+PKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

KAA0051360.1 uncharacterized protein E6C27_scaffold55G00840 [Cucumis melo var. makuwa]1.17e-8786.25Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAI DWAMPKSV ELRSFLGLANYYRRFVEG SKR SPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLL SSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

KAA0064232.1 reverse transcriptase [Cucumis melo var. makuwa]9.32e-8886.88Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFL LANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLN AERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

TYK08407.1 reverse transcriptase [Cucumis melo var. makuwa]1.12e-8688.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.8e-7388.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

A0A5A7UXR6 Reverse transcriptase1.8e-7388.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

A0A5D3B7E7 Reverse transcriptase1.8e-7388.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

A0A5D3BRZ6 Reverse transcriptase1.8e-7388.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

A0A5D3C4R1 Reverse transcriptase1.8e-7388.12Show/hide
Query:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG
        ME+ KIAAIRDWAMPKSV ELRSFLGLANYYRRFVEG SKRASPLTELLKKDVHWNWD ECQ            GPLLGIADVTKPFEVETDASDYALGG
Subjt:  MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQ------------GPLLGIADVTKPFEVETDASDYALGG

Query:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH
        VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSF+VKT+NSATCH
Subjt:  VLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCH

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.0e-2540.52Show/hide
Query:  EKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDV-----HWNWD--------LECQGPLLGIADVTKPFEVETDASDYALGGVL
        EKI AI+ + +P    E+++FLGL  YYR+F+   +  A P+T+ LKK++     +  +D        L  + P+L + D TK F + TDASD ALG VL
Subjt:  EKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDV-----HWNWD--------LECQGPLLGIADVTKPFEVETDASDYALGGVL

Query:  LQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTEN
         Q+GHP++Y SR LN  E  Y+  EKE+LA+V   + +R YLLG  F + +++
Subjt:  LQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTEN

P0CT34 Transposon Tf2-1 polyprotein7.5e-2440.82Show/hide
Query:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL
        +E I  +  W  PK+  ELR FLG  NY R+F+  +S+   PL  LLKKDV W W            +C    P+L   D +K   +ETDASD A+G VL
Subjt:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL

Query:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL
         Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL
Subjt:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL

P0CT35 Transposon Tf2-2 polyprotein7.5e-2440.82Show/hide
Query:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL
        +E I  +  W  PK+  ELR FLG  NY R+F+  +S+   PL  LLKKDV W W            +C    P+L   D +K   +ETDASD A+G VL
Subjt:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL

Query:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL
         Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL
Subjt:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL

P0CT41 Transposon Tf2-12 polyprotein7.5e-2440.82Show/hide
Query:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL
        +E I  +  W  PK+  ELR FLG  NY R+F+  +S+   PL  LLKKDV W W            +C    P+L   D +K   +ETDASD A+G VL
Subjt:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL

Query:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL
         Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL
Subjt:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL

Q9UR07 Transposon Tf2-11 polyprotein7.5e-2440.82Show/hide
Query:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL
        +E I  +  W  PK+  ELR FLG  NY R+F+  +S+   PL  LLKKDV W W            +C    P+L   D +K   +ETDASD A+G VL
Subjt:  KEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWD----------LEC--QGPLLGIADVTKPFEVETDASDYALGGVL

Query:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL
         Q       +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL
Subjt:  LQNG-----HPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.0e-0956.25Show/hide
Query:  KIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKD
        K+ A+  W  PK+  ELR FLGL  YYRRFV+   K   PLTELLKK+
Subjt:  KIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAGAGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTCTTGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTCGATTTGTCGAGGG
ATCCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAATTGGGACCTCGAGTGCCAAGGGCCACTTCTAGGGATTGCGGATGTGACCAAAC
CTTTCGAAGTCGAGACAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGGCACCCGATCGCATACGAAAGTCGAAAATTAAATGCAGCCGAAAGGAGG
TATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTATAGTGAAGACGGAAAACAGTGCAACCTG
CCACTCTTTACCCAGCCAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAGAGAAGATTGCTGCGATACGCGACTGGGCAATGCCGAAATCAGTCTTGGAGTTACGCTCCTTCCTCGGGCTGGCAAATTACTATCGTCGATTTGTCGAGGG
ATCCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAATTGGGACCTCGAGTGCCAAGGGCCACTTCTAGGGATTGCGGATGTGACCAAAC
CTTTCGAAGTCGAGACAGATGCGTCTGATTATGCGTTGGGGGGTGTGCTCCTACAGAATGGGCACCCGATCGCATACGAAAGTCGAAAATTAAATGCAGCCGAAAGGAGG
TATACTGTGTCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTATAGTGAAGACGGAAAACAGTGCAACCTG
CCACTCTTTACCCAGCCAAAGTTGA
Protein sequenceShow/hide protein sequence
MEKEKIAAIRDWAMPKSVLELRSFLGLANYYRRFVEGSSKRASPLTELLKKDVHWNWDLECQGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAERR
YTVSEKEMLAVVHCLRAWRQYLLGSSFIVKTENSATCHSLPSQS