CuGenDBv2

Gene ID	IVF0024145
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr10:5822992..5823387
RNA-Seq Expression	IVF0024145
Synteny	IVF0024145
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]

1.31e-59

83.97

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T S QSDL +TSNP+PESSSN  VPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN +YLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLINATLSSSAL HV+GSV+SKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]

6.81e-60

86.26

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL  TSNP+PESSSN SVPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLIN TLSSSALAHV+ SVSSKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]

1.37e-60

84.73

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL ETSNP+ ESSSNS VPTSTLFLLSNICNL+PIRLDSTNY+L KYQVSSI KAHS FGHIDDTLP P K+L SST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SR Q LITLINATLSSSALAHV+GSVSSKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]

3.43e-60

84.73

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T S QSDL +TSNP+PESSSN  VPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLINATLSSSAL HV+GSV+SKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]

4.96e-59

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL ETSNP+PESSSN SV TSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNS+IN  YLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGS
        SRDQ LITLINATLSSSAL HV+ S
Subjt:  SRDQTLITLINATLSSSALAHVIGS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UTE5 Putative mitochondrial protein

2.0e-49

83.97

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T S QSDL +TSNP+PESSSN  VPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN +YLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLINATLSSSAL HV+GSV+SKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

A0A5A7UZE5 Putative mitochondrial protein

3.1e-50

86.26

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL  TSNP+PESSSN SVPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLIN TLSSSALAHV+ SVSSKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

A0A5A7VGG0 Retrotransposon protein

4.5e-49

84.73

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL ETSNP+ ESSSNS VPTSTLFLLSNICNL+PIRLDSTNY+L KYQVSSI KAHS FGHIDDTLP P K+L SST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SR Q LITLINATLSSSALAHV+GSVSSKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

A0A5D3BEU0 Putative mitochondrial protein

7.0e-50

84.73

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T S QSDL +TSNP+PESSSN  VPTSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNSEIN EYLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSKAL
        SRDQ LITLINATLSSSAL HV+GSV+SKAL
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSKAL

A0A5D3CCL2 Retrotransposon protein

1.2e-46

82.17

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Query:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL
        M T SSQSDL ETSNP+PESSSN SV TSTLFLLSNICNL+PIRLDSTNYVL KYQVSSI KAHSLFGHIDDTLP P K+LPSST GTNS+IN  YLQWL
Subjt:  MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWL

Query:  SRDQTLITLINATLSSSALAHVIGSVSSK
        SRDQ LITLINATLSSSAL HV+ S+  K
Subjt:  SRDQTLITLINATLSSSALAHVIGSVSSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTCACCTCTAGTTCCCAATCTGACCTTCTCGAAACCTCCAATCCCGTTCCTGAGTCATCATCAAACTCATCTGTTCCCACCTCTACACTCTTTTTGTTATCCAACAT
CTGCAACCTCCTACCCATTCGACTGGATTCTACAAATTACGTTCTCCAGAAATATCAAGTTTCATCCATCTTCAAAGCCCATTCTCTCTTTGGCCATATTGATGATACCC
TTCCTCGTCCTTTAAAATATTTACCATCTTCAACTCCTGGAACCAACTCCGAAATCAACCTAGAGTATCTTCAATGGCTATCTCGTGACCAAACTCTCATTACCTTAATA
AACGCCACTCTATCATCCTCTGCCCTAGCCCATGTTATCGGCTCAGTCTCCTCTAAGGCATTATAG

mRNA sequence

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Protein sequence

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MVTSSSQSDLLETSNPVPESSSNSSVPTSTLFLLSNICNLLPIRLDSTNYVLQKYQVSSIFKAHSLFGHIDDTLPRPLKYLPSSTPGTNSEINLEYLQWLSRDQTLITLI
NATLSSSALAHVIGSVSSKAL

IVF0024145 (gene) of Melon (IVF77) v1 genome