CuGenDBv2

Gene ID	IVF0024159
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr04:16796795..16797091
RNA-Seq Expression	IVF0024159
Synteny	IVF0024159
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036682.1 uncharacterized protein E6C27_scaffold510G00270 [Cucumis melo var. makuwa]

2.33e-60

100

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

KAA0045175.1 uncharacterized protein E6C27_scaffold30G001760 [Cucumis melo var. makuwa]

3.58e-56

94.9

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIP LPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

KAA0059855.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.37e-53

94.9

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVS TIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

KAA0068197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.08e-50

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

TYK12703.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.51e-53

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZT3 DUF4219 domain-containing protein

2.5e-44

100

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-41

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-41

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-41

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-41

95.92

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Query:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI
        MDAITSSSFTS S LIFDGDNYQVWAVRMEA MEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKAC+FAAVSSTIFTRIMTLRSAYEI
Subjt:  MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACGCCATAACAAGTTCCAGTTTCACTTCAACTTCTTCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAAGCTGATATGGAAGCTTTGGA
TATTTGGGAAGCAGTGGAAGAGGATTATGAAATTCCTGCTCTTCCAGACAATCCTACCATGGCACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAA
AGGCATGTATGTTTGCTGCAGTCTCATCTACTATCTTCACTAGAATTATGACTCTGAGATCAGCATATGAGATATAG

mRNA sequence

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Protein sequence

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MDAITSSSFTSTSSLIFDGDNYQVWAVRMEADMEALDIWEAVEEDYEIPALPDNPTMAQIKAQKEKKTKKSKAKACMFAAVSSTIFTRIMTLRSAYEI

IVF0024159 (gene) of Melon (IVF77) v1 genome