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IVF0024197 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024197
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:6044440..6044862
RNA-Seq ExpressionIVF0024197
SyntenyIVF0024197
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026125.1 hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa]3.96e-7381.43Show/hide
Query:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP
        MA  GFL +AKE M+MEKLIDAKIKVRYNYT FVPASI+ITD+QG+NFII TVPP +ARW VER VRVHGSFK+KAA+EFDEHNPSA+VYTYN FQAIP 
Subjt:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP

Query:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TT++RGDYS+LNSDKHSISN+TQAKKNNSSE EYDPFDQ
Subjt:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

KAA0040385.1 hypothetical protein E6C27_scaffold3125G00090 [Cucumis melo var. makuwa]4.61e-7982.86Show/hide
Query:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP
        M CGGFL VAKETM+M+KLIDAKIKVRYNYT FVPASI+ITD+QG+NFII TVPP EARW VER+VRVHGSFK+K AD+FDEHNP A+VYTYNGFQA PP
Subjt:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP

Query:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
        ETT++RGDY++LNSDKHSISN TQAKKNNSSESEYD FDQ
Subjt:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.97e-7285.61Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNYT FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.47e-7084.89Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNY  FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.47e-7084.89Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNY  FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

TrEMBL top hitse value%identityAlignment
A0A5A7TG40 Uncharacterized protein4.7e-6082.86Show/hide
Query:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP
        M CGGFL VAKETM+M+KLIDAKIKVRYNYT FVPASI+ITD+QG+NFII TVPP EARW VER+VRVHGSFK+K AD+FDEHNP A+VYTYNGFQA PP
Subjt:  MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPP

Query:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
        ETT++RGDY++LNSDKHSISN TQAKKNNSSESEYD FDQ
Subjt:  ETTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein6.1e-6084.89Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNY  FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein1.2e-6085.61Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNYT FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein6.1e-6084.89Show/hide
Query:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE
        ACGGFL VAKETM+M+KLIDAKIKVRYNY  FVPASILITDNQGENFI+ TV P+EARWLVERNVRVHGSF+TKAADEFD+HN  A+ YTYNGFQAIPPE
Subjt:  ACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPE

Query:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
         TRT GDYS  NSDKHSIS +TQAKKNNSSESEYDPFDQ
Subjt:  TTRTRGDYSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

A0A5D3DFM9 LINE-1 retrotransposable element ORF2 protein2.3e-5986.36Show/hide
Query:  VAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPETTRTRGD
        V KETM+MEKLIDAKIKVRYNY  FVPAS+LITDNQGENFI+ TVPP++ARWLVERNVRVHG+FKTKAADEFD+HNP A+ YTYNGFQAIP E+TRTRGD
Subjt:  VAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPETTRTRGD

Query:  YSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ
        YSFLNSDKHS+SN+TQAKKNNSSESEYDPFDQ
Subjt:  YSFLNSDKHSISNYTQAKKNNSSESEYDPFDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGTGGAGGCTTCCTTGTTGTAGCTAAGGAAACAATGCGGATGGAAAAACTCATTGATGCCAAGATTAAAGTCAGATATAATTATACCGATTTTGTTCCAGCCTC
TATATTGATCACTGATAATCAAGGTGAAAATTTTATCATCATTACAGTTCCACCGTCCGAAGCCAGATGGCTTGTAGAAAGAAATGTAAGAGTACATGGCTCTTTCAAAA
CAAAAGCCGCTGACGAATTTGATGAACACAACCCTTCAGCTAAAGTCTACACATACAATGGCTTCCAAGCAATCCCGCCGGAAACAACAAGAACACGCGGTGACTACAGT
TTCCTAAATTCTGACAAGCACTCTATCTCAAATTACACACAAGCCAAGAAAAACAACTCATCAGAATCTGAATATGATCCATTCGATCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTGTGGAGGCTTCCTTGTTGTAGCTAAGGAAACAATGCGGATGGAAAAACTCATTGATGCCAAGATTAAAGTCAGATATAATTATACCGATTTTGTTCCAGCCTC
TATATTGATCACTGATAATCAAGGTGAAAATTTTATCATCATTACAGTTCCACCGTCCGAAGCCAGATGGCTTGTAGAAAGAAATGTAAGAGTACATGGCTCTTTCAAAA
CAAAAGCCGCTGACGAATTTGATGAACACAACCCTTCAGCTAAAGTCTACACATACAATGGCTTCCAAGCAATCCCGCCGGAAACAACAAGAACACGCGGTGACTACAGT
TTCCTAAATTCTGACAAGCACTCTATCTCAAATTACACACAAGCCAAGAAAAACAACTCATCAGAATCTGAATATGATCCATTCGATCAATAG
Protein sequenceShow/hide protein sequence
MACGGFLVVAKETMRMEKLIDAKIKVRYNYTDFVPASILITDNQGENFIIITVPPSEARWLVERNVRVHGSFKTKAADEFDEHNPSAKVYTYNGFQAIPPETTRTRGDYS
FLNSDKHSISNYTQAKKNNSSESEYDPFDQ