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IVF0024207 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024207
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr02:16926893..16927771
RNA-Seq ExpressionIVF0024207
SyntenyIVF0024207
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]1.41e-5259.49Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------
        M++FRPISCCNVIYKCISKILA+R+            SAF+ GRSIIDNI+L QELVGGYHLN                                     
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------

Query:  --SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
          S LFA L KSSIFV GVS+E AS LAASM F LGNL VRYLGLPLLTGRL  ND APLIQRITS IRSWTARVLSF G LQLVR +L SL VY
Subjt:  --SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.11e-4350.88Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLNS----CLF------AYLGKSSIFVVGV----------
        M++FRPISCCNVIYKCISKILA+RL            SAFI GRSIIDNI+L QELV GYHLNS    C        AY   +  F+ GV          
Subjt:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLNS----CLF------AYLGKSSIFVVGV----------

Query:  --------------------------------------------------SNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIR
                                                          SNE AS LAASM FVLGNL VRYLGLPLLTGRL  ND APLIQRITS+IR
Subjt:  --------------------------------------------------SNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIR

Query:  SWTARVLSFAGRLQLVRYMLRSLWVY
        SWTA VLSFAGRLQLVR +LRSL VY
Subjt:  SWTARVLSFAGRLQLVRYMLRSLWVY

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]4.24e-4247.68Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------
        ++DFRPISCCNV+YKCISKILA+RL            SAFI GRSII+NI+L QELVGGYHLNS                                    
Subjt:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------

Query:  ------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRA
                                            C         LFA   KSSIF+ GV+NE ASRLAA M FV GNL VRYLGLPLLTGRL  ND  
Subjt:  ------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRA

Query:  PLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
        PLIQRITS+IRS +ARVLSFAGRLQLV  +L SL VY
Subjt:  PLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]7.85e-5159.69Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN---------------------SCLFAYL---------
        M++FRPISCCNVIYKCISKILA+R+            SAF+ GRSIIDNI+L QELVGGYHLN                       LF  L         
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN---------------------SCLFAYL---------

Query:  -----GKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
              KSSIFV GVS+E AS LAASM F LGNL VRYLGLPLLTGRL  ND APLIQRITS IRSWTARVLSF G LQLVR +L SL VY
Subjt:  -----GKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]1.27e-4249.07Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------
        ++DF PISCC+VIYKCIS+ILA+RL             AFI GRSIIDNI+L QELVG YHL+                                     
Subjt:  MKDFRPISCCNVIYKCISKILANRLH-----------SAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------

Query:  ---------------------SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGR
                             S LFA L KS IF+VGV++  ASRLAA+M F +G+L VRYLGLPLL+ RL  +D  PLIQRITS+IRSW+ARVLSFAGR
Subjt:  ---------------------SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGR

Query:  LQLVRYMLRSLWVY
        LQLVR +LRSL VY
Subjt:  LQLVRYMLRSLWVY

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932252.9e-3647.68Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------
        ++DFRPISCCNV+YKCISKILA+RL            SAFI GRSII+NI+L QELVGGYHLNS                                    
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------

Query:  ------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRA
                                            C         LFA   KSSIF+ GV+NE ASRLAA M FV GNL VRYLGLPLLTGRL  ND  
Subjt:  ------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRA

Query:  PLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
        PLIQRITS+IRS +ARVLSFAGRLQLV  +L SL VY
Subjt:  PLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

A0A1S4E258 uncharacterized protein LOC1034968801.2e-4259.69Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN---------------------SCLFAYL---------
        M++FRPISCCNVIYKCISKILA+R+            SAF+ GRSIIDNI+L QELVGGYHLN                       LF  L         
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN---------------------SCLFAYL---------

Query:  -----GKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
              KSSIFV GVS+E AS LAASM F LGNL VRYLGLPLLTGRL  ND APLIQRITS IRSWTARVLSF G LQLVR +L SL VY
Subjt:  -----GKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

A0A5A7UV01 F17F8.51.9e-3542.54Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------
        ++DFR ISCCNV+YKCISKILA+RL            SAF+ GRSII+NI+L QELVGGYHLNS                                    
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS------------------------------------

Query:  -------------------------------------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRL
                                                                           C         LFA   KSSIFV GV+NE AS L
Subjt:  -------------------------------------------------------------------C---------LFAYLGKSSIFVVGVSNEVASRL

Query:  AASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
        AA M FV GNL +RYLGLPLL GRL  ND APLIQRITS+IRSWTARVLSFAGRLQLVR++LRSL VY
Subjt:  AASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.7e-4459.49Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------
        M++FRPISCCNVIYKCISKILA+R+            SAF+ GRSIIDNI+L QELVGGYHLN                                     
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLN-------------------------------------

Query:  --SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY
          S LFA L KSSIFV GVS+E AS LAASM F LGNL VRYLGLPLLTGRL  ND APLIQRITS IRSWTARVLSF G LQLVR +L SL VY
Subjt:  --SCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein1.2e-3750.88Show/hide
Query:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS----CLF------AYLGKSSIFVVGV----------
        M++FRPISCCNVIYKCISKILA+RL            SAFI GRSIIDNI+L QELV GYHLNS    C        AY   +  F+ GV          
Subjt:  MKDFRPISCCNVIYKCISKILANRL-----------HSAFIHGRSIIDNIMLFQELVGGYHLNS----CLF------AYLGKSSIFVVGV----------

Query:  --------------------------------------------------SNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIR
                                                          SNE AS LAASM FVLGNL VRYLGLPLLTGRL  ND APLIQRITS+IR
Subjt:  --------------------------------------------------SNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIR

Query:  SWTARVLSFAGRLQLVRYMLRSLWVY
        SWTA VLSFAGRLQLVR +LRSL VY
Subjt:  SWTARVLSFAGRLQLVRYMLRSLWVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.8e-1246.75Show/hide
Query:  VVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSL
        + GV +   + +  S  F  G L VRYLGLPLLT ++  +D  PL+++I  +I  WTAR LSFAGRLQL+  ++ SL
Subjt:  VVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPLIQRITSQIRSWTARVLSFAGRLQLVRYMLRSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGATTTTCGACCTATTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATTCTGCTTTTATTCATGGGAGGAGTATTATTGA
TAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTCGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTG
CTTCTCGCCTTGCTGCTAGTATGAGTTTTGTTCTTGGGAATCTCTCTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATCGTGCTCCTCTT
ATTCAACGTATTACTAGTCAGATTCGTTCTTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGATTTTCGACCTATTTCTTGTTGTAATGTGATATACAAATGCATTTCTAAGATTTTAGCTAATAGGCTTCATTCTGCTTTTATTCATGGGAGGAGTATTATTGA
TAACATTATGCTTTTTCAGGAGCTGGTTGGGGGTTATCATCTCAACTCTTGTTTGTTCGCATATCTTGGGAAAAGCTCTATTTTTGTTGTGGGGGTTAGTAATGAGGTTG
CTTCTCGCCTTGCTGCTAGTATGAGTTTTGTTCTTGGGAATCTCTCTGTTCGCTATCTTGGGCTTCCTTTACTTACTGGTAGGTTGTGTCCTAATGATCGTGCTCCTCTT
ATTCAACGTATTACTAGTCAGATTCGTTCTTGGACTGCTAGAGTTCTTTCTTTTGCTGGTAGATTGCAGCTTGTTCGTTATATGCTTCGCAGTCTTTGGGTTTACTAG
Protein sequenceShow/hide protein sequence
MKDFRPISCCNVIYKCISKILANRLHSAFIHGRSIIDNIMLFQELVGGYHLNSCLFAYLGKSSIFVVGVSNEVASRLAASMSFVLGNLSVRYLGLPLLTGRLCPNDRAPL
IQRITSQIRSWTARVLSFAGRLQLVRYMLRSLWVY