; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0024223 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024223
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr11:23305833..23306644
RNA-Seq ExpressionIVF0024223
SyntenyIVF0024223
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]9.55e-10780.09Show/hide
Query:  MTVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVR-VWERSIHGGPCRDLCIIGLNVP-ANYNS--VPTKDVIDMEFPAMCSPRMNMS
        MTVIENRIKLLKKTFQAIAEMRGPA +        + I   R      VW      G         LN P  +Y++  VPTKDVIDMEFPAMCSPRMNMS
Subjt:  MTVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVR-VWERSIHGGPCRDLCIIGLNVP-ANYNS--VPTKDVIDMEFPAMCSPRMNMS

Query:  PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS
        PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS
Subjt:  PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS

Query:  FIKMPDSMKAIYGRILLGGNL
        FIKMPDSMKAIYGRILLGGNL
Subjt:  FIKMPDSMKAIYGRILLGGNL

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]1.39e-8083.66Show/hide
Query:  IGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAA
        I  N+ A Y+SVPTKD IDMEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATDQLRTIAEWP+K MSWED MAA
Subjt:  IGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAA

Query:  QVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN
        QVIELI+AI NLTMAEKSKCVMLVNQKVSLMRSFIKMPD MKA Y R+LLGG+
Subjt:  QVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]2.11e-4847.44Show/hide
Query:  LLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERS--------------------------IHGGPCRDLCIIGLNVPANYNSVPTKDVIDM
        +LKKTFQAI EMRGP  +        + I   R      W R+                            G        I  NV  + NS   +D IDM
Subjt:  LLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERS--------------------------IHGGPCRDLCIIGLNVPANYNSVPTKDVIDM

Query:  EFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKC
        EFPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI E                            QVIEL+E IPNLTMAEKSKC
Subjt:  EFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKC

Query:  VMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL
        +M++NQKVSLMRSFIKM DSM A Y ++LLGG+L
Subjt:  VMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL

KAA0064184.1 retrotransposon protein [Cucumis melo var. makuwa]5.70e-6961.61Show/hide
Query:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM
        T+IE+RIKLLKKTFQAIAEMRGP     +KR   +   AL      V+ +    G C +    I  NV  + +SVP +D I+MEFPAMC PRMNMSP++M
Subjt:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM

Query:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM
        M GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM
Subjt:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM

Query:  PDSMKAIYGRI
         DSMK  Y ++
Subjt:  PDSMKAIYGRI

TYK02844.1 retrotransposon protein [Cucumis melo var. makuwa]1.72e-7061.61Show/hide
Query:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM
        T+IE+RIKLLKKTFQAIAEMRGP     +KR   +   AL      V+ +    G C +    I  NV  + +SVP +D I+MEFPAMC PRMNMSP++M
Subjt:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM

Query:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM
        M GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM
Subjt:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM

Query:  PDSMKAIYGRI
         DSMK  Y ++
Subjt:  PDSMKAIYGRI

TrEMBL top hitse value%identityAlignment
A0A5A7TYU4 Retrotransposon protein2.4e-6383.66Show/hide
Query:  IGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAA
        I  N+ A Y+SVPTKD IDMEFP MCSPRMNMSP++MMGGRSGRS+DGR GS+ QKRKHSMQQFETYDLI ECMEAATDQLRTIAEWP+K MSWED MAA
Subjt:  IGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAA

Query:  QVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN
        QVIELI+AI NLTMAEKSKCVMLVNQKVSLMRSFIKMPD MKA Y R+LLGG+
Subjt:  QVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN

A0A5A7VAC3 Retrotransposon protein1.4e-5561.61Show/hide
Query:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM
        T+IE+RIKLLKKTFQAIAEMRGP     +KR   +   AL      V+ +    G C +    I  NV  + +SVP +D I+MEFPAMC PRMNMSP++M
Subjt:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM

Query:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM
        M GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM
Subjt:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM

Query:  PDSMKAIYGRI
         DSMK  Y ++
Subjt:  PDSMKAIYGRI

A0A5D3B9T0 Retrotransposon protein2.7e-8380.09Show/hide
Query:  MTVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVR-VWERSIHGGPCRDLCIIGLNVP-ANYNS--VPTKDVIDMEFPAMCSPRMNMS
        MTVIENRIKLLKKTFQAIAEMRGPA +        + I   R      VW      G         LN P  +Y++  VPTKDVIDMEFPAMCSPRMNMS
Subjt:  MTVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVR-VWERSIHGGPCRDLCIIGLNVP-ANYNS--VPTKDVIDMEFPAMCSPRMNMS

Query:  PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS
        PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS
Subjt:  PENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRS

Query:  FIKMPDSMKAIYGRILLGGNL
        FIKMPDSMKAIYGRILLGGNL
Subjt:  FIKMPDSMKAIYGRILLGGNL

A0A5D3BUJ4 Retrotransposon protein1.4e-5561.61Show/hide
Query:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM
        T+IE+RIKLLKKTFQAIAEMRGP     +KR   +   AL      V+ +    G C +    I  NV  + +SVP +D I+MEFPAMC PRMNMSP++M
Subjt:  TVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRD-LCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENM

Query:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM
        M GRS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATDQLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM
Subjt:  MGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKM

Query:  PDSMKAIYGRI
         DSMK  Y ++
Subjt:  PDSMKAIYGRI

A0A5D3DLC6 Retrotransposon protein2.1e-3847.44Show/hide
Query:  LLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERS--------------------------IHGGPCRDLCIIGLNVPANYNSVPTKDVIDM
        +LKKTFQAI EMRGP  +        + I   R      W R+                            G        I  NV  + NS   +D IDM
Subjt:  LLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERS--------------------------IHGGPCRDLCIIGLNVPANYNSVPTKDVIDM

Query:  EFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKC
        EFPAMCSPRMNMSPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI E                            QVIEL+E IPNLTMAEKSKC
Subjt:  EFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKC

Query:  VMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL
        +M++NQKVSLMRSFIKM DSM A Y ++LLGG+L
Subjt:  VMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTCATCGAAAACCGAATAAAGTTATTGAAGAAGACATTTCAAGCCATTGCGGAGATGAGGGGCCCAGCAGACGCATCCTGCAGCAAAAGGACTCCTGAACAAGC
CATTTCCGCATTACGATGCACTGCCGTACGTGTTTGGGAAAGATCGATCCACGGGGGCCCGTGCAGAGACCTTTGCATCATCGGTTTGAACGTGCCAGCCAACTACAATA
GTGTCCCCACAAAGGATGTCATCGACATGGAGTTCCCTGCTATGTGCAGCCCGAGGATGAACATGTCCCCTGAGAACATGATGGGCGGTAGATCAGGTCGGTCGAATGAT
GGTAGAATGGGCTCTAATGGACAGAAAAGGAAGCACTCCATGCAGCAGTTTGAGACGTACGACCTGATTCACGAATGTATGGAGGCTGCGACTGATCAACTGAGAACCAT
TGCAGAATGGCCGGAGAAATTTATGAGTTGGGAGGACGCGATGGCGGCTCAGGTGATTGAGCTTATAGAAGCCATCCCAAACCTTACTATGGCGGAGAAGAGTAAGTGTG
TCATGCTAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCATTTACGGTAGGATCCTCCTTGGCGGTAACCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCGTCATCGAAAACCGAATAAAGTTATTGAAGAAGACATTTCAAGCCATTGCGGAGATGAGGGGCCCAGCAGACGCATCCTGCAGCAAAAGGACTCCTGAACAAGC
CATTTCCGCATTACGATGCACTGCCGTACGTGTTTGGGAAAGATCGATCCACGGGGGCCCGTGCAGAGACCTTTGCATCATCGGTTTGAACGTGCCAGCCAACTACAATA
GTGTCCCCACAAAGGATGTCATCGACATGGAGTTCCCTGCTATGTGCAGCCCGAGGATGAACATGTCCCCTGAGAACATGATGGGCGGTAGATCAGGTCGGTCGAATGAT
GGTAGAATGGGCTCTAATGGACAGAAAAGGAAGCACTCCATGCAGCAGTTTGAGACGTACGACCTGATTCACGAATGTATGGAGGCTGCGACTGATCAACTGAGAACCAT
TGCAGAATGGCCGGAGAAATTTATGAGTTGGGAGGACGCGATGGCGGCTCAGGTGATTGAGCTTATAGAAGCCATCCCAAACCTTACTATGGCGGAGAAGAGTAAGTGTG
TCATGCTAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCATTTACGGTAGGATCCTCCTTGGCGGTAACCTGTGA
Protein sequenceShow/hide protein sequence
MTVIENRIKLLKKTFQAIAEMRGPADASCSKRTPEQAISALRCTAVRVWERSIHGGPCRDLCIIGLNVPANYNSVPTKDVIDMEFPAMCSPRMNMSPENMMGGRSGRSND
GRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGNL