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IVF0024237 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024237
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr12:14767441..14767902
RNA-Seq ExpressionIVF0024237
SyntenyIVF0024237
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036001.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.25e-9190.85Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMD MN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGV VDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEVRSFLGLAGYYRRFIEDFSRLALPLT +TRKNAKFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

KAA0036100.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.23e-9088.24Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        M F LTNAP +FMDLMN IFH+YLDQFVIVFIDDILVY +DRE+HEEHLRIVLQTLR+KQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERP S TEVRSFLGLAGYYR FIEDFSRLALPLT LTRKN KFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

KAA0061419.1 reverse transcriptase [Cucumis melo var. makuwa]1.29e-9192.16Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAPT+FMDLMN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEV SFLGLAGYYRRFIEDFSRLALPLT LTRKNAKFEWSDK EQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

TYK23887.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.75e-9390.2Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMDLMN IFH+YLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLR+KQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERP S TEVRSFLGLAGYYRRFIEDFSRLALPLT LTRKN KFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

TYK25908.1 Retrotransposon protein [Cucumis melo var. makuwa]4.82e-9390.2Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMDLMN IFH+YLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLR+KQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERP S TEVRSFLGLAGYYRRFIEDFSRLALPLT LTRKN KFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

TrEMBL top hitse value%identityAlignment
A0A5A7T306 DNA/RNA polymerases superfamily protein1.6e-7490.85Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMD MN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGV VDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEVRSFLGLAGYYRRFIEDFSRLALPLT +TRKNAKFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

A0A5A7TA17 Putative gag-pol polyprotein4.8e-7490.85Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMDLMN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEVRSFLGLAGYYRRFIEDFS+LALPLT LTRKNAKFEWSDKC+Q F
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

A0A5A7UBV9 Uncharacterized protein9.6e-7592.16Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        M F LTNAP +FMDLMN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEVRSFLGLAGYYRRFIEDFSRLALPLT LTRKNAKFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

A0A5D3BEU1 DNA/RNA polymerases superfamily protein3.3e-7592.16Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAP +FMDLMN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEVRSFLGLAGYYRRFIEDFS+LALPLT LTRKNAKFEWSDKCEQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

A0A5D3DZ50 DNA/RNA polymerases superfamily protein6.2e-7492.16Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF LTNAPT+FMDLMN IFHQYLDQFVIVFIDDILVYS+DRE+HEEHLRIVLQTLRDKQLYAKF KCEFWLEQVVFLGHVVSAKGVSVDPQKV+AVV W
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF
        ERPTS TEV SFLGLAGYYRRFIEDFSRLALPLT LTRKNAKFEWSDK EQSF
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.5e-2739.58Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF L NAP  F   MN I    L++  +V++DDI+V+S   + H + L +V + L    L  +  KCEF  ++  FLGHV++  G+  +P+K++A+ K+
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFE
          PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN K +
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFE

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.8e-2236.96Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        +PF L NA +IF   ++ +  + + +   V++DD++++S +   H  H+  VL+ L D  +    +K  F+ E V +LG +VS  G   DP+KVKA+ ++
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTR
          P    +VRSFLGLA YYR FI+DF+ +A P+T + +
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTR

P20825 Retrovirus-related Pol polyprotein from transposon 2975.5e-2739.58Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        MPF L NAP  F   MN I    L++  +V++DDI+++S     H   +++V   L D  L  +  KCEF  ++  FLGH+V+  G+  +P KVKA+V +
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFE
          PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K +
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFE

P92523 Uncharacterized mitochondrial protein AtMg008602.6e-2144.44Show/hide
Query:  HLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLG--HVVSAKGVSVDPQKVKAVVKWERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEW
        HL +VLQ     Q YA  KKC F   Q+ +LG  H++S +GVS DP K++A+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLG--HVVSAKGVSVDPQKVKAVVKWERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEW

Query:  SDKCEQSF
        ++    +F
Subjt:  SDKCEQSF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.4e-2742.75Show/hide
Query:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW
        +PF L NAP IF  +++ I  +++ +   V+IDDI+V+S D + H ++LR+VL +L    L    +K  F   QV FLG++V+A G+  DP+KV+A+ + 
Subjt:  MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKW

Query:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTR
          PTS  E++ FLG+  YYR+FI+D++++A PLT LTR
Subjt:  ERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.9e-2244.44Show/hide
Query:  HLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLG--HVVSAKGVSVDPQKVKAVVKWERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEW
        HL +VLQ     Q YA  KKC F   Q+ +LG  H++S +GVS DP K++A+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLG--HVVSAKGVSVDPQKVKAVVKWERPTSGTEVRSFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEW

Query:  SDKCEQSF
        ++    +F
Subjt:  SDKCEQSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCAGTTTAACGAATGCGCCAACGATTTTCATGGATCTCATGAACACGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATTGATGATATATTAGT
TTACTCGATTGACAGAGAAGCCCATGAGGAACATCTAAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAAAAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTCTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATCCACAAAAAGTGAAAGCGGTTGTCAAGTGGGAAAGACCAACTAGTGGTACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCCTTGACCACTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAAGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCAGTTTAACGAATGCGCCAACGATTTTCATGGATCTCATGAACACGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATTGATGATATATTAGT
TTACTCGATTGACAGAGAAGCCCATGAGGAACATCTAAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAAAAAATGTGAGTTCTGGTTGGAAC
AAGTAGTATTCTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATCCACAAAAAGTGAAAGCGGTTGTCAAGTGGGAAAGACCAACTAGTGGTACAGAAGTACGT
AGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCATTGCCCTTGACCACTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGA
TAAATGCGAGCAAAGTTTTTAG
Protein sequenceShow/hide protein sequence
MPFSLTNAPTIFMDLMNTIFHQYLDQFVIVFIDDILVYSIDREAHEEHLRIVLQTLRDKQLYAKFKKCEFWLEQVVFLGHVVSAKGVSVDPQKVKAVVKWERPTSGTEVR
SFLGLAGYYRRFIEDFSRLALPLTTLTRKNAKFEWSDKCEQSF