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IVF0024261 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024261
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:11289943..11290329
RNA-Seq ExpressionIVF0024261
SyntenyIVF0024261
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059855.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.64e-6281.25Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYME          DY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVS TIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+R LNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

KAA0068197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.06e-5982.03Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYME          DY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+R+LNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

TYK12703.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.14e-6282.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYME          DY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

TYK27376.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.45e-5982.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYME          DY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

XP_008456224.1 PREDICTED: uncharacterized protein LOC103496228 [Cucumis melo]7.13e-6077.34Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ASSSFSSISP IFDGDNYQVW VRMEAYME          DY IPALP+NPTM QIK QKEKKTKK KAKACLFAAVSSTIFTRI+TLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYME----------DYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKS+Y  DERI+G+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

TrEMBL top hitse value%identityAlignment
A0A5A7V105 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-4983.59Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSFSSISPLIFDGDNYQVWAVRMEAYM          EDY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKS+YE DERIKGIRVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-4982.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYM          EDY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-4982.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYM          EDY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-4982.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYM          EDY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-4982.81Show/hide
Query:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN
        MDA+ SSSF+SISPLIFDGDNYQVWAVRMEAYM          EDY IPALPDNPTM QIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRS YEIWN
Subjt:  MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYM----------EDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWN

Query:  YLKSEYEEDERIKGIRVLNLIREFDCRR
        YLKSEYE DERIKG+RVLNLIREF+ ++
Subjt:  YLKSEYEEDERIKGIRVLNLIREFDCRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGATTATGT
AATTCCTGCTCTTCCAGACAATCCTACCATGGTACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCCTGTTTGTTTGCTGCAGTCTCATCTA
CTATCTTCACTCGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAAGTCAGAGTATGAGGAAGATGAAAGAATCAAAGGAATACGTGTGCTAAACTTG
ATTCGAGAATTCGATTGCAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGCCGTAGCAAGTTCCAGTTTCTCTTCAATTTCTCCATTGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGATTATGT
AATTCCTGCTCTTCCAGACAATCCTACCATGGTACAAATCAAAGCGCAAAAGGAGAAGAAGACAAAGAAATCCAAGGCAAAGGCCTGTTTGTTTGCTGCAGTCTCATCTA
CTATCTTCACTCGAATTATGACTCTGAGATCAACATATGAGATATGGAATTATCTCAAGTCAGAGTATGAGGAAGATGAAAGAATCAAAGGAATACGTGTGCTAAACTTG
ATTCGAGAATTCGATTGCAGAAGATGA
Protein sequenceShow/hide protein sequence
MDAVASSSFSSISPLIFDGDNYQVWAVRMEAYMEDYVIPALPDNPTMVQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSTYEIWNYLKSEYEEDERIKGIRVLNL
IREFDCRR