; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0024279 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024279
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr09:16085031..16085439
RNA-Seq ExpressionIVF0024279
SyntenyIVF0024279
Gene Ontology termsGO:0006623 - protein targeting to vacuole (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033884.1 retrotransposon protein [Cucumis melo var. makuwa]1.64e-1981.13Show/hide
Query:  DRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        DRATG FVETF D+GSNEP GY+GFDM DGND+EFP MYSQ ID+SQDDVRTS
Subjt:  DRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

KAA0049673.1 retrotransposon protein [Cucumis melo var. makuwa]4.53e-2283.33Show/hide
Query:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        +D+ATG F ETF DV SNEP GY+GFDMPDGNDMEFPSMYSQ IDMSQDDVRTS
Subjt:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

KAA0066061.1 retrotransposon protein [Cucumis melo var. makuwa]8.32e-28100Show/hide
Query:  GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD
        GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD
Subjt:  GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD

TYK00075.1 retrotransposon protein [Cucumis melo var. makuwa]2.64e-1963.51Show/hide
Query:  SNGTMRQSASLPRRNYSTTGRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        S GT+ Q+ S         GRDRATG F +TF DVGSNEP GY GFDM DGN+ EFP +YSQ IDMSQDDVR S
Subjt:  SNGTMRQSASLPRRNYSTTGRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

XP_016900897.1 PREDICTED: uncharacterized protein LOC103491960 [Cucumis melo]5.96e-2676.39Show/hide
Query:  MRQSASLPRRNYSTTG--RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        MRQSASLPRRNYS  G  RDRATG F ETF D+ SNE  GY+GFDM D NDMEFP MYSQRI MSQDDVR S
Subjt:  MRQSASLPRRNYSTTG--RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

TrEMBL top hitse value%identityAlignment
A0A1S4DY48 uncharacterized protein LOC1034919601.2e-1876.39Show/hide
Query:  MRQSASLPRRNYSTTG--RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        MRQSASLPRRNYS  G  RDRATG F ETF D+ SNE  GY+GFDM D NDMEFP MYSQRI MSQDDVR S
Subjt:  MRQSASLPRRNYSTTG--RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

A0A5A7TT49 Retrotransposon protein2.9e-1477.78Show/hide
Query:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        RDRATG F+ETF D+GSNE   Y+GFDM DGNDM+FPSMYSQ IDMSQDDVR S
Subjt:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

A0A5A7U1E5 Retrotransposon protein3.1e-1683.33Show/hide
Query:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        +D+ATG F ETF DV SNEP GY+GFDMPDGNDMEFPSMYSQ IDMSQDDVRTS
Subjt:  RDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

A0A5D3BL06 Retrotransposon protein4.2e-21100Show/hide
Query:  GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD
        GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD
Subjt:  GRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDD

A0A5D3BQI7 Retrotransposon protein2.7e-1581.13Show/hide
Query:  DRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS
        DRATG FVETF D+GSNEP GY+GFDM DGND+EFP MYSQ ID+SQDDVRTS
Subjt:  DRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCATCATGCAGTGGGTTCGAATGGAACGATGAGACAAAGTGCATCATTGCCGAGAAGGAACTATTCGACAACTGGAAGGGATAGGGCGACGGGTTGCTTTGTAGA
GACGTTCACTGACGTTGGGTCTAACGAGCCTGACGGATATAAGGGATTTGACATGCCTGATGGAAATGATATGGAGTTTCCATCCATGTACAGCCAAAGGATTGACATGT
CCCAGGATGATGTACGCACCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCATCATGCAGTGGGTTCGAATGGAACGATGAGACAAAGTGCATCATTGCCGAGAAGGAACTATTCGACAACTGGAAGGGATAGGGCGACGGGTTGCTTTGTAGA
GACGTTCACTGACGTTGGGTCTAACGAGCCTGACGGATATAAGGGATTTGACATGCCTGATGGAAATGATATGGAGTTTCCATCCATGTACAGCCAAAGGATTGACATGT
CCCAGGATGATGTACGCACCTCATGA
Protein sequenceShow/hide protein sequence
MGHHAVGSNGTMRQSASLPRRNYSTTGRDRATGCFVETFTDVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDVRTS