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IVF0024290 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024290
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr02:19690588..19691013
RNA-Seq ExpressionIVF0024290
SyntenyIVF0024290
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050358.1 uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa]1.88e-7784.4Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MAGQ QS LMSFDLN PFRFEGAHFKRWKQKMLFFLTLKKVAT CTTEK +V EKDPTE+QLKNL TWTETDFI KNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DA QKKYDTEE  SKKYA++ YLRYQ+T+D+SVEAQSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

KAA0055814.1 hypothetical protein E6C27_scaffold181G002040 [Cucumis melo var. makuwa]3.43e-7987.5Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MA +IQSDLMS D NRPFRFEGA+FKRWKQKMLFFLTLKKV TACTTEK +VLEKDPTE+QLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEA
         DALQKKYDTEEA SKKYA+SRYL YQM DDKSVEA
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEA

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]2.77e-9597.16Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]7.21e-8791.49Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MAGQIQSDLMS DLNR FRFEGAHFKRWKQK+LFFLTLKKVATACTTEKP+V EKDPTE+QLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDTEEA SKKYA+SRYLRYQMTDDKSVEAQSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]1.42e-7888.65Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        M GQIQSDLMS DLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEK +V EKDP E+QLKNL TWTETDFICKNLILNG+TDELYDYYS MTT KEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDT+EA SKKYA+SRYLRYQMTDDKSVE QSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

TrEMBL top hitse value%identityAlignment
A0A5A7UA92 Uncharacterized protein1.9e-6189.47Show/hide
Query:  LMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEVCDALQKKY
        LMS DLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKP+V EKDPT++QLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAK+V +ALQKKY
Subjt:  LMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEVCDALQKKY

Query:  DTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
        DTEEA SKKYA+SRYLRYQMTDD+SVEAQSHEI
Subjt:  DTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

A0A5A7USR3 Uncharacterized protein7.0e-7297.16Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

A0A5A7UYY4 Uncharacterized protein3.4e-6691.49Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        MAGQIQSDLMS DLNR FRFEGAHFKRWKQK+LFFLTLKKVATACTTEKP+V EKDPTE+QLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAKEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDTEEA SKKYA+SRYLRYQMTDDKSVEAQSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

A0A5D3BDS3 Uncharacterized protein9.5e-6188.72Show/hide
Query:  LMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEVCDALQKKY
        LMS DLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACT EKP+V EKDPT++QLKNL TWTETDFICKNLILNG+TDELYDYYS MTTAK+V +ALQKKY
Subjt:  LMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEVCDALQKKY

Query:  DTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
        DTEEA SKKYA+SRYLRYQMTDD+SVEAQSHEI
Subjt:  DTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein7.0e-6488.65Show/hide
Query:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV
        M GQIQSDLMS DLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEK +V EKDP E+QLKNL TWTETDFICKNLILNG+TDELYDYYS MTT KEV
Subjt:  MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEV

Query:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI
         DALQKKYDT+EA SKKYA+SRYLRYQMTDDKSVE QSHEI
Subjt:  CDALQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQSHEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G00980.1 zinc knuckle (CCHC-type) family protein3.5e-0723.88Show/hide
Query:  FDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNL-------PTWTETDFICKNLILNGITDELYDYYS-IMTTAKEVCDA
        F + +  RF+G  +  W  +M  FL   K+    +   P +      E   + +         W   D++C   ++N ++D LY  YS     AKE+ D 
Subjt:  FDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNL-------PTWTETDFICKNLILNGITDELYDYYS-IMTTAKEVCDA

Query:  LQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQ
        L+  Y  +E+ SK+  + +Y+ ++M +++ +  Q
Subjt:  LQKKYDTEEAWSKKYAISRYLRYQMTDDKSVEAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGACAAATCCAATCCGACTTGATGTCTTTTGATCTCAACCGTCCATTCCGTTTTGAAGGAGCACACTTCAAAAGGTGGAAACAAAAAATGTTATTTTTCCTCAC
GCTGAAGAAGGTGGCCACTGCTTGTACTACTGAAAAGCCGGAGGTTTTAGAAAAAGATCCTACAGAAAAACAACTAAAGAACCTCCCCACCTGGACAGAAACTGACTTCA
TCTGTAAGAACCTAATTCTTAATGGTATTACTGATGAACTATATGATTATTACAGTATCATGACTACTGCAAAAGAAGTGTGTGATGCGCTACAAAAGAAGTACGATACT
GAAGAAGCATGGTCGAAGAAGTACGCTATCAGCCGATACCTGAGATATCAAATGACTGATGACAAATCCGTGGAGGCACAATCACATGAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGACAAATCCAATCCGACTTGATGTCTTTTGATCTCAACCGTCCATTCCGTTTTGAAGGAGCACACTTCAAAAGGTGGAAACAAAAAATGTTATTTTTCCTCAC
GCTGAAGAAGGTGGCCACTGCTTGTACTACTGAAAAGCCGGAGGTTTTAGAAAAAGATCCTACAGAAAAACAACTAAAGAACCTCCCCACCTGGACAGAAACTGACTTCA
TCTGTAAGAACCTAATTCTTAATGGTATTACTGATGAACTATATGATTATTACAGTATCATGACTACTGCAAAAGAAGTGTGTGATGCGCTACAAAAGAAGTACGATACT
GAAGAAGCATGGTCGAAGAAGTACGCTATCAGCCGATACCTGAGATATCAAATGACTGATGACAAATCCGTGGAGGCACAATCACATGAAATCTAG
Protein sequenceShow/hide protein sequence
MAGQIQSDLMSFDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPEVLEKDPTEKQLKNLPTWTETDFICKNLILNGITDELYDYYSIMTTAKEVCDALQKKYDT
EEAWSKKYAISRYLRYQMTDDKSVEAQSHEI