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IVF0024349 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024349
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr03:1999024..1999335
RNA-Seq ExpressionIVF0024349
SyntenyIVF0024349
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.32e-4985.29Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  + QSDL +TSNPI ESSSNPY+PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN +YLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.74e-4886.27Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL  TSNPI ESSSNP +PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]2.31e-4984.31Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL ETSNPILESSSN ++PTSTLFLLSNICNLVPIRLDST Y+LWKYQVSSILKA+S FGHIDDTLPC PK+L SST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.21e-4986.27Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  + QSDL +TSNPI ESSSNPY+PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]3.91e-4984.31Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL ETSNPI ESSSNP + TSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNS+IN  YLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein1.4e-4085.29Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  + QSDL +TSNPI ESSSNPY+PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN +YLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
A0A5A7UZE5 Putative mitochondrial protein3.0e-4086.27Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL  TSNPI ESSSNP +PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
A0A5A7VGG0 Retrotransposon protein4.0e-4084.31Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL ETSNPILESSSN ++PTSTLFLLSNICNLVPIRLDST Y+LWKYQVSSILKA+S FGHIDDTLPC PK+L SST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
A0A5D3BEU0 Putative mitochondrial protein4.7e-4186.27Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  + QSDL +TSNPI ESSSNPY+PTSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNSEIN EYLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
A0A5D3CCL2 Retrotransposon protein7.5e-3984.31Show/hide
Query:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL
        MA  +SQSDL ETSNPI ESSSNP + TSTLFLLSNICNLVPIRLDST YVLWKYQVSSILKA+SLFGHIDDTLPC PK+LPSST GTNS+IN  YLQWL
Subjt:  MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWL

Query:  SR
        SR
Subjt:  SR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCTCTAACTCCCAATCTGACCTTCTCGAAACCTCCAATCCCATTCTCGAATCCTCATCAAACCCATATATTCCTACCTCTACTCTATTTTTGTTATCCAACAT
CTGCAACCTCGTACCCATTCGACTGGATTCTACAAAATACGTTCTCTGGAAATATCAAGTTTCCTCCATCCTCAAAGCCTATTCTCTCTTTGGCCACATTGATGATACTC
TTCCTTGTACTCCAAAATATTTACCTTCTTCAACTTCTGGAACCAACTCCGAAATCAATCTCGAGTATCTTCAATGGCTATCTCGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCTCTAACTCCCAATCTGACCTTCTCGAAACCTCCAATCCCATTCTCGAATCCTCATCAAACCCATATATTCCTACCTCTACTCTATTTTTGTTATCCAACAT
CTGCAACCTCGTACCCATTCGACTGGATTCTACAAAATACGTTCTCTGGAAATATCAAGTTTCCTCCATCCTCAAAGCCTATTCTCTCTTTGGCCACATTGATGATACTC
TTCCTTGTACTCCAAAATATTTACCTTCTTCAACTTCTGGAACCAACTCCGAAATCAATCTCGAGTATCTTCAATGGCTATCTCGCTACTAA
Protein sequenceShow/hide protein sequence
MAASNSQSDLLETSNPILESSSNPYIPTSTLFLLSNICNLVPIRLDSTKYVLWKYQVSSILKAYSLFGHIDDTLPCTPKYLPSSTSGTNSEINLEYLQWLSRY