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IVF0024367 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024367
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase SHPRH isoform X4
Genome locationchr09:8986343..8986555
RNA-Seq ExpressionIVF0024367
SyntenyIVF0024367
Gene Ontology termsGO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040480.1 hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa]1.65e-0643.08Show/hide
Query:  MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKF
        M  +G   +FHC   K I  K MK  +  K+ I +VAM+K   G TM  +EW +L+EGK HEE +
Subjt:  MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKF
KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]2.60e-1568.33Show/hide
Query:  EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE
        EGD T+FH +M KKIR KIMK   N+K+  +QVAM+KGI GITMTK EWD+LIEGK HEE
Subjt:  EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE
TrEMBL top hitse value%identityAlignment
A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X41.8e-1268.33Show/hide
Query:  EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE
        EGD T+FH +M KKIR KIMK   N+K+  +QVAM+KGI GITMTK EWD+LIEGK HEE
Subjt:  EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE
A0A5D3DJB8 CCHC-type domain-containing protein8.2e-0543.08Show/hide
Query:  MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKF
        M  +G   +FHC   K I  K MK  +  K+ I +VAM+K   G TM  +EW +L+EGK HEE +
Subjt:  MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGCGAAGGAGACACGACGATATTCCACTGCATTATGCCGAAGAAGATACGCAATAAAATTATGAAGCCTAGCAAGAACAACAAGAGGAAGATTGTTCAAGTGGC
AATGAACAAGGGAATATTTGGAATTACAATGACAAAATACGAATGGGACGAGTTAATAGAAGGCAAGATGCATGAAGAGAAGTTCACCATGTTTATAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGCGAAGGAGACACGACGATATTCCACTGCATTATGCCGAAGAAGATACGCAATAAAATTATGAAGCCTAGCAAGAACAACAAGAGGAAGATTGTTCAAGTGGC
AATGAACAAGGGAATATTTGGAATTACAATGACAAAATACGAATGGGACGAGTTAATAGAAGGCAAGATGCATGAAGAGAAGTTCACCATGTTTATAAAATGA
Protein sequenceShow/hide protein sequence
MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKFTMFIK