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IVF0024370 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024370
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Genome locationchr01:23273966..23274413
RNA-Seq ExpressionIVF0024370
SyntenyIVF0024370
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY32494.1 Uncharacterized protein TCM_040446 [Theobroma cacao]6.56e-6467.57Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MAPYEALYGR+CRT +CWDEVGERKL+ +EL+  T + VKVI+E+LK AQD QKNY+DK RKDLEFEV            GV+RF  +GKL+PRYIG + 
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        IIERIGPVAYRL LP EL RIH+VFHVSML+KYVPDP+HILE  P++L
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

KAA0026229.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.04e-8191.89Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE
        MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG            VLRFRWKGKLSPRYIGLYE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

KAA0042458.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.65e-6677.03Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE
        MAPYEALYGRRCRT VCWDEVGERKL+G ELV+ T+ENVK+I+E+LK AQD QK+YADK R+DLEFEVG            VLRF  KGKLSPR+I  YE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I+ERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDP+HILE QPVQL
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

KAA0065718.1 DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]4.34e-6566.89Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE
        MAPYEALYGR CRT VCW+EVGERKL+G ELV++TT N+K+I+E L+ AQD QK+YADK R++LEF+VG            V+RF  KGKLSPRYIG Y+
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I ER+GP AYRL LP+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

XP_038887189.1 uncharacterized protein LOC120077377 [Benincasa hispida]2.02e-6470.27Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE
        MA YEALYGR+CRTSVCWDEVGERKL GLELV+ TT+ +K+I+EKLK AQD QK+YA+K R+DLEFEVG            VL F  KGKLSPRYIG YE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVG------------VLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I+ERI P  YRLA PMELSRIHDV HVSMLRKY+ DP+H+LE QP+QL
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

TrEMBL top hitse value%identityAlignment
A0A5A7SLT2 DNA/RNA polymerases superfamily protein1.6e-6891.89Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV            GVLRFRWKGKLSPRYIGLYE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5A7U2V7 Reverse transcriptase4.7e-4966.89Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MAPYEALYGR CRT VCW+EVGERKL+G ELV+ TT N+K+I+E L+ AQD QK+YADK R++LEF+V            GV+RF  KGKLSPRYIG Y+
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I ER+GP AYRL LP+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5A7UK27 Reverse transcriptase3.0e-5173.65Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MA YEALYGR CRT VCW+EVGERKL+GLELV+ T+ENVK+I+E+LK AQD +K+YADK R+DLEFEV            GVLRF  KGKLSPR+IG YE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I+ERIGPV YRLALPMELSRI DVFHVSMLRKYVPDP HILE QPV L
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5A7VDJ3 DNA/RNA polymerase superfamily protein1.6e-4966.89Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MAPYEALYGR CRT VCW+EVGERKL+G ELV++TT N+K+I+E L+ AQD QK+YADK R++LEF+V            GV+RF  KGKLSPRYIG Y+
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I ER+GP AYRL LP+EL+RIHDVFHVSMLRKY+PDP+H+L+ QPV+L
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

A0A5D3DHF7 Putative DNA/RNA polymerases superfamily protein1.3e-5477.03Show/hide
Query:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE
        MAPYEALYGRRCRT VCWDEVGERKL+G ELV+ T+ENVK+I+E+LK AQD QK+YADK R+DLEFEV            GVLRF  KGKLSPR+I  YE
Subjt:  MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEV------------GVLRFRWKGKLSPRYIGLYE

Query:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL
        I+ERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDP+HILE QPVQL
Subjt:  IIERIGPVAYRLALPMELSRIHDVFHVSMLRKYVPDPTHILEYQPVQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCATATGAGGCATTGTATGGTCGAAGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGA
AAATGTGAAAGTAATCAAGGAAAAATTGAAAATGGCGCAAGATCTACAAAAAAATTATGCTGATAAAGAACGAAAAGATTTGGAATTTGAGGTTGGCGTGCTAAGATTCA
GATGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCTGCCAATGGAACTTTCTAGAATCCAT
GATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCATATGAGGCATTGTATGGTCGAAGATGTAGAACTTCTGTTTGTTGGGATGAAGTTGGTGAAAGAAAGCTAATGGGGCTAGAATTGGTACGTTCCACCACAGA
AAATGTGAAAGTAATCAAGGAAAAATTGAAAATGGCGCAAGATCTACAAAAAAATTATGCTGATAAAGAACGAAAAGATTTGGAATTTGAGGTTGGCGTGCTAAGATTCA
GATGGAAGGGGAAACTAAGTCCAAGATATATTGGTCTATATGAAATTATTGAACGAATTGGACCGGTTGCATATCGATTAGCCCTGCCAATGGAACTTTCTAGAATCCAT
GATGTATTTCATGTATCGATGTTGCGTAAATACGTTCCTGACCCGACACACATCTTAGAATATCAACCAGTGCAGTTATAA
Protein sequenceShow/hide protein sequence
MAPYEALYGRRCRTSVCWDEVGERKLMGLELVRSTTENVKVIKEKLKMAQDLQKNYADKERKDLEFEVGVLRFRWKGKLSPRYIGLYEIIERIGPVAYRLALPMELSRIH
DVFHVSMLRKYVPDPTHILEYQPVQL