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IVF0024376 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024376
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:19841745..19842651
RNA-Seq ExpressionIVF0024376
SyntenyIVF0024376
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025375.1 zinc finger Y-chromosomal protein 1-like isoform X1 [Cucumis melo var. makuwa]1.29e-6287.7Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSS +ICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIC RRGGRPLKYVAAEKIV LKYV AEKIVVSNMLQ KRFLSQVYCSRE  R L YVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCS
        AE +VISNML  RRSS QICCS
Subjt:  AEKIVISNMLQPRRSSSQICCS

KAA0051981.1 hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa]2.84e-7182.39Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRR GRPLKYVA EKI+ LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

KAA0064215.1 hypothetical protein E6C27_scaffold548G001630 [Cucumis melo var. makuwa]4.08e-6880.28Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRR G PLKYVA EKI  LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

TYK04576.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.09e-6782.39Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRR GRPLKYVA EKI+ LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

TYK18585.1 hypothetical protein E5676_scaffold119G001120 [Cucumis melo var. makuwa]5.45e-6780.28Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRR G PLKYVA EKI  LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

TrEMBL top hitse value%identityAlignment
A0A5A7SLN4 Zinc finger Y-chromosomal protein 1-like isoform X11.1e-4887.7Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSS +ICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQIC RRGGRPLKYVAAEKIV LKYV AEKIVVSNMLQ KRFLSQVYCSRE  R L YVA
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCS
        AE +VISNML  RRSS QICCS
Subjt:  AEKIVISNMLQPRRSSSQICCS

A0A5A7UEK9 Uncharacterized protein3.2e-5682.39Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRR GRPLKYVA EKI+ LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

A0A5A7VE92 Uncharacterized protein1.3e-5480.28Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRR G PLKYVA EKI  LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

A0A5D3C2C8 Retrotransposon gag protein3.2e-5682.39Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRR GRPLKYVA EKI+ LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQIC  QKDFCLKYIVAEKVVVSY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

A0A5D3D4V9 Uncharacterized protein1.3e-5480.28Show/hide
Query:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA
        MLQ RRSSSQICCSQKDFCLKYIVAEKV VSYILQPR+SSSQICCRR G PLKYVA EKI  LKYVAAEKI+VSNMLQ +R  SQ+ CS ++   LKY+ 
Subjt:  MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVA

Query:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL
        AEK+V+S MLQPRRSSSQICCSQKDFCLKYIVAEKVV+SY+L
Subjt:  AEKIVISNMLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAACCGAGAAGATCGTCATCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGCCGTCGAGGAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGCTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCT
CAAATATGTTGCAGTCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGAGGTCGTTCCCTCAAATATGTTGCAGCTGAGAAGATCGTCATCTCAAATATGTTA
CAACCGAGAAGATCGTCATCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAACCGAGAAGATCGTCATCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGCAGCCGAG
GATGTCGTCGTCTCAAATATGTTGCCGTCGAGGAGGTCGTCCCCTCAAATATGTTGCAGCTGAGAAGATTGTCGCTCTTAAATATGTTGCAGCTGAGAAGATCGTCGTCT
CAAATATGTTGCAGTCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGAGGTCGTTCCCTCAAATATGTTGCAGCTGAGAAGATCGTCATCTCAAATATGTTA
CAACCGAGAAGATCGTCATCTCAAATATGTTGCAGCCAAAAAGATTTTTGTCTCAAGTATATTGTAGCCGAGAAAGTCGTCGTCTCATATATATTGTAG
Protein sequenceShow/hide protein sequence
MLQPRRSSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSSQICCRRGGRPLKYVAAEKIVALKYVAAEKIVVSNMLQSKRFLSQVYCSRERGRSLKYVAAEKIVISNML
QPRRSSSQICCSQKDFCLKYIVAEKVVVSYIL