; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0024424 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024424
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr02:11381282..11381868
RNA-Seq ExpressionIVF0024424
SyntenyIVF0024424
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]6.54e-10389.74Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTKTSVLPYVEATEEALECSYRSFE ANATIFPTEGLSM+RYVSKTSLMIAKTMIKSG             DSEVISLPKAKEKFGLGYKPVTSE EK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEI IAVVSEN SLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

KAA0043020.1 uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]8.79e-10083.08Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTK S LPYVEATEEALECSYRSFEIANATIFP EGLSM+RYVSKTSLMIAKTMIKS             GDS+VISLPKAKEKFGLGYKP  SEWEK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ LL+GCEMKEERISIPHL ETFK  ELLFDT+QRKR NEDSEISIAVVSEN SL HPLVH+CPPGFELNNWEIKKTL+VTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

KAA0052108.1 uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa]8.08e-7875.56Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALL
        MFVTKTS LPYVEA EEALECSYRSFEIANATIFPT                       GDSEVISL KAKEKFGLGYKP+ SEWEKVR KKKE+R+ALL
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALL

Query:  MGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGS
        +G EMKEERISIPHLSETFK  ELLFDT QRKR   DSEISI VVSEN  LPHPLVH+CPPGFELNNWEIKKTL+VTKGS
Subjt:  MGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGS

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]1.12e-10790.77Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSM+RYVSKTSLMIAKTMIKSG             DSEVISLPKAKE FGLGYKPVTSEWEK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKK+LKVTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]1.12e-9189.14Show/hide
Query:  CSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLMGCEMKE
        CSYRSFEIANATIFPTEGLSM+RYVSKTSLMIAKTMIKSG             DSEVISLPKAKEKFGLGYKPVTSEWEKVRAK KE+R+ALLMGCEMKE
Subjt:  CSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSG-------------DSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLMGCEMKE

Query:  ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISI VVSEN SLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
Subjt:  ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase3.7e-8989.74Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTKTSVLPYVEATEEALECSYRSFE ANATIFPTEGLSM+RYVSKTSLMIAKTMIKS             GDSEVISLPKAKEKFGLGYKPVTSE EK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEI IAVVSEN SLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

A0A5A7TI68 Uncharacterized protein1.6e-8183.08Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTK S LPYVEATEEALECSYRSFEIANATIFP EGLSM+RYVSKTSLMIAKTMIKS             GDS+VISLPKAKEKFGLGYKP  SEWEK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ LL+GCEMKEERISIPHL ETFK  ELLFDT+QRKR NEDSEISIAVVSEN SL HPLVH+CPPGFELNNWEIKKTL+VTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

A0A5A7UA36 Reverse transcriptase domain-containing protein1.3e-6575.56Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALL
        MFVTKTS LPYVEA EEALECSYRSFEIANATIFPT                       GDSEVISL KAKEKFGLGYKP+ SEWEKVR KKKE+R+ALL
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALL

Query:  MGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGS
        +G EMKEERISIPHLSETFK  ELLFDT QRKR   DSEISI VVSEN  LPHPLVH+CPPGFELNNWEIKKTL+VTKGS
Subjt:  MGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGS

A0A5A7V681 Retrotrans_gag domain-containing protein2.3e-9190.77Show/hide
Query:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK
        MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSM+RYVSKTSLMIAKTMIKS             GDSEVISLPKAKE FGLGYKPVTSEWEK
Subjt:  MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEK

Query:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        VRAKKKE+R+ALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKK+LKVTKGSQK
Subjt:  VRAKKKERRNALLMGCEMKEERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

A0A5A7VAU5 Uncharacterized protein1.2e-7989.14Show/hide
Query:  CSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLMGCEMKE
        CSYRSFEIANATIFPTEGLSM+RYVSKTSLMIAKTMIKS             GDSEVISLPKAKEKFGLGYKPVTSEWEKVRAK KE+R+ALLMGCEMKE
Subjt:  CSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKS-------------GDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLMGCEMKE

Query:  ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
        ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISI VVSEN SLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK
Subjt:  ERISIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTAACAAAAACATCAGTACTTCCTTATGTTGAAGCAACGGAAGAAGCTCTGGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATATTTCCGACAGA
AGGTTTGAGCATGAACCGTTATGTGTCTAAGACATCTCTAATGATTGCAAAGACAATGATCAAAAGTGGGGACTCGGAAGTGATTTCTCTTCCTAAAGCCAAGGAAAAGT
TTGGTTTGGGCTATAAGCCAGTAACTTCTGAATGGGAGAAGGTTCGAGCAAAAAAGAAAGAAAGGAGAAACGCGCTCCTTATGGGATGCGAGATGAAGGAGGAAAGAATA
AGCATACCTCATTTATCTGAGACATTTAAGCTTGGAGAATTATTGTTTGATACCCACCAGAGAAAAAGACATAACGAAGATTCTGAGATCTCGATTGCAGTTGTATCCGA
GAATATTAGTCTGCCTCATCCTTTGGTTCATAAGTGTCCGCCAGGATTTGAGTTGAACAATTGGGAGATCAAGAAGACATTGAAAGTCACTAAGGGATCACAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTAACAAAAACATCAGTACTTCCTTATGTTGAAGCAACGGAAGAAGCTCTGGAATGTTCTTATAGATCGTTTGAAATTGCTAATGCTACTATATTTCCGACAGA
AGGTTTGAGCATGAACCGTTATGTGTCTAAGACATCTCTAATGATTGCAAAGACAATGATCAAAAGTGGGGACTCGGAAGTGATTTCTCTTCCTAAAGCCAAGGAAAAGT
TTGGTTTGGGCTATAAGCCAGTAACTTCTGAATGGGAGAAGGTTCGAGCAAAAAAGAAAGAAAGGAGAAACGCGCTCCTTATGGGATGCGAGATGAAGGAGGAAAGAATA
AGCATACCTCATTTATCTGAGACATTTAAGCTTGGAGAATTATTGTTTGATACCCACCAGAGAAAAAGACATAACGAAGATTCTGAGATCTCGATTGCAGTTGTATCCGA
GAATATTAGTCTGCCTCATCCTTTGGTTCATAAGTGTCCGCCAGGATTTGAGTTGAACAATTGGGAGATCAAGAAGACATTGAAAGTCACTAAGGGATCACAAAAGTAA
Protein sequenceShow/hide protein sequence
MFVTKTSVLPYVEATEEALECSYRSFEIANATIFPTEGLSMNRYVSKTSLMIAKTMIKSGDSEVISLPKAKEKFGLGYKPVTSEWEKVRAKKKERRNALLMGCEMKEERI
SIPHLSETFKLGELLFDTHQRKRHNEDSEISIAVVSENISLPHPLVHKCPPGFELNNWEIKKTLKVTKGSQK