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IVF0024437 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024437
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationchr08:26531182..26533027
RNA-Seq ExpressionIVF0024437
SyntenyIVF0024437
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051945.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.70e-2047.66Show/hide
Query:  NEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVG
        NEGNGLSS TS V  +K+  RM   +F +   KS P+TV LF                  R+GHK FEL DS FE+FNLHSWH PSH++ KY  GSE+ G
Subjt:  NEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVG

Query:  RRTKVQP
        R+ +  P
Subjt:  RRTKVQP

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.76e-2143.98Show/hide
Query:  EGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFF---------FPSRGKKRSC--------------------------NGFFVLCRVG---
        EGNGLS RTS V  RKV  RM   QF HR VKS PATVSLFF         F +R  + S                           +G  +  R     
Subjt:  EGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFF---------FPSRGKKRSC--------------------------NGFFVLCRVG---

Query:  -HKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSSGVR
           RFEL+DS  +DF+LHS H PS VF KY  G E+V  RTKVQ   IEK+ANAL  SG  S G R
Subjt:  -HKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSSGVR

KAA0065520.1 retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa]2.37e-2367.07Show/hide
Query:  FPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS
        F S  KKRSC+GF VLC VGHK FEL+DS  EDF+LHSW  PS VF KY  GS++V  RTKVQ  TIEK+AN LPTSG+R S
Subjt:  FPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.83e-1576.47Show/hide
Query:  EDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS
        +DF+LH WHH S +FP+Y  GSE+VGRRTKVQ  TIEKIANALPTSGERSS
Subjt:  EDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]2.10e-1636.92Show/hide
Query:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLF------------------------FFPSRGKKRSC---
        LPTSGERSS VRN  +C    EGNGLSSRTSG R +K  ARM Q QF   G KS P TVS                            P    +R C   
Subjt:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLF------------------------FFPSRGKKRSC---

Query:  -----------NGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTK-------VQPRTIEKIANALPTSGERSSGVRNH
                   +GFF L R+GHK  +LR S           H S + P  + G   +GR            P+  ++    LPT GERSSG RNH
Subjt:  -----------NGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTK-------VQPRTIEKIANALPTSGERSSGVRNH

TrEMBL top hitse value%identityAlignment
A0A5A7VEB1 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed4.0e-2063.04Show/hide
Query:  SSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS
        S  A  S+F  P   KKRSC+GF VLC VGHK FEL+DS  EDF+LHSW  PS VF KY  GS++V  RTKVQ  TIEK+AN LPTSG+R S
Subjt:  SSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS

A0A5A7VGQ5 Uncharacterized protein2.9e-1841.18Show/hide
Query:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFF---------FPSRGKKRS-------------------
        LP+ G  +S +         +EGNGLS RTS V  RKV  RM   QF HR VKS PATVSLFF         F +R  + S                   
Subjt:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFF---------FPSRGKKRS-------------------

Query:  -------CNGFFVLCRV----GHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSSGVR
                +G  +  R        RFEL+DS  +DF+LHS H PS VF KY  G E+V  RTKVQ   IEK+ANAL  SG  S G R
Subjt:  -------CNGFFVLCRV----GHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSSGVR

A0A5D3BG85 Uncharacterized protein4.7e-1376.47Show/hide
Query:  EDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS
        +DF+LH WHH S +FP+Y  GSE+VGRRTKVQ  TIEKIANALPTSGERSS
Subjt:  EDFNLHSWHHPSHVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSS

A0A5D3CKZ2 Pentatricopeptide repeat-containing protein6.0e-1647.66Show/hide
Query:  NEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVG
        NEGNGLSS TS V  +K+  RM   +F +   KS P+TV LF                  R+GHK FEL DS FE+FNLHSWH PSH++ KY  GSE+ G
Subjt:  NEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVG

Query:  RRTKVQP
        R+ +  P
Subjt:  RRTKVQP

A0A5D3DFP2 Uncharacterized protein1.2e-1337.44Show/hide
Query:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLF------------------------FFPSRGKKRSC---
        LPTSGERSS VRN  +C +  EGNGLSSRTSG R +K  ARM Q QF   G KS P TVS                            P    +R C   
Subjt:  LPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLF------------------------FFPSRGKKRSC---

Query:  -----------NGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTK-------VQPRTIEKIANALPTSGERSSGVRNH
                   +GFF L R+GHK  +LR S        +  H S + P  + G   +GR            P+   K    LPT GERSSG RNH
Subjt:  -----------NGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPSHVFPKYWLGSEVVGRRTK-------VQPRTIEKIANALPTSGERSSGVRNH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCCTGTGTCAGAAACCACCGAGAATGCTTTTCAGCGAACGAAGGAAACGGGCTAAGCTCTAGGACTTCTGGTGT
TCGTTCCAGGAAGGTGCCTGCGAGAATGTCCCAGATTCAGTTTTTCCATCGCGGGGTAAAAAGCAGTCCTGCAACTGTTTCTTTGTTTTTTTTTCCATCACGGGGTAAAA
AACGATCGTGTAACGGTTTCTTTGTTTTGTGTCGTGTTGGTCATAAGCGCTTCGAGCTTCGAGACTCGTGCTTCGAGGACTTCAATCTCCATTCTTGGCATCATCCCTCA
CACGTTTTCCCAAAGTATTGGTTGGGAAGTGAGGTCGTAGGGCGAAGAACTAAGGTGCAACCAAGAACGATCGAAAAGATTGCCAATGCTCTTCCAACAAGTGGCGAACG
CTCGTCCGGTGTCAGAAACCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAATGCTCTTCCAACGAGTGGCGAACGCTCGTCCTGTGTCAGAAACCACCGAGAATGCTTTTCAGCGAACGAAGGAAACGGGCTAAGCTCTAGGACTTCTGGTGT
TCGTTCCAGGAAGGTGCCTGCGAGAATGTCCCAGATTCAGTTTTTCCATCGCGGGGTAAAAAGCAGTCCTGCAACTGTTTCTTTGTTTTTTTTTCCATCACGGGGTAAAA
AACGATCGTGTAACGGTTTCTTTGTTTTGTGTCGTGTTGGTCATAAGCGCTTCGAGCTTCGAGACTCGTGCTTCGAGGACTTCAATCTCCATTCTTGGCATCATCCCTCA
CACGTTTTCCCAAAGTATTGGTTGGGAAGTGAGGTCGTAGGGCGAAGAACTAAGGTGCAACCAAGAACGATCGAAAAGATTGCCAATGCTCTTCCAACAAGTGGCGAACG
CTCGTCCGGTGTCAGAAACCACTAA
Protein sequenceShow/hide protein sequence
MANALPTSGERSSCVRNHRECFSANEGNGLSSRTSGVRSRKVPARMSQIQFFHRGVKSSPATVSLFFFPSRGKKRSCNGFFVLCRVGHKRFELRDSCFEDFNLHSWHHPS
HVFPKYWLGSEVVGRRTKVQPRTIEKIANALPTSGERSSGVRNH