CuGenDBv2

Gene ID	IVF0024559
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr08:9218123..9218479
RNA-Seq Expression	IVF0024559
Synteny	IVF0024559
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]

2.66e-82

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRV NII
Subjt:  IVAEKELFDNWVRVWNII

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]

7.93e-84

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVA+KELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]

5.00e-78

99.12

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

1.95e-84

100

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

KAA0059075.1 retrotransposon protein [Cucumis melo var. makuwa]

1.87e-82

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHV TREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T3X9 Retrotransposon protein

3.8e-63

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRV NII
Subjt:  IVAEKELFDNWVRVWNII

A0A5A7TXH6 Retrotransposon protein

2.6e-64

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVA+KELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

A0A5A7UHB1 Retrotransposon protein

9.1e-65

100

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

A0A5A7UZR1 Retrotransposon protein

2.9e-63

99.15

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHV TREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRVWNII
        IVAEKELFDNWVRVWNII
Subjt:  IVAEKELFDNWVRVWNII

A0A5D3CWL2 Retrotransposon protein

2.1e-61

100

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAA
TGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAAT
TGGGTTAGGGTATGGAATATAATTTAA

mRNA sequence

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Protein sequence

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MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN
WVRVWNII

IVF0024559 (gene) of Melon (IVF77) v1 genome