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IVF0024564 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024564
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhotosystem II PsbX
Genome locationchr02:2317200..2320344
RNA-Seq ExpressionIVF0024564
SyntenyIVF0024564
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009518 - Photosystem II PsbX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653441.1 hypothetical protein Csa_007456 [Cucumis sativus]2.01e-6392.44Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKAVAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDP
        G VVVAI GAVIGVANFDP
Subjt:  GAVVVAIFGAVIGVANFDP

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]1.57e-72100Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKRS
        GAVVVAIFGAVIGVANFDPVKRS
Subjt:  GAVVVAIFGAVIGVANFDPVKRS

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]4.14e-5580.95Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTS VS+ALP T+ATHK LSN AFFNPLP   S +SRK IAAAP S+GR+VAVRSSLKEKA+ G+TAAAL ASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGAVVVAIFGAVIGVANFDPVKRS
        AAGG VVVAI GAVIGV+NFDPVKR 
Subjt:  AAGGAVVVAIFGAVIGVANFDPVKRS

XP_031735956.1 uncharacterized protein LOC116401689 [Cucumis sativus]1.98e-6692.68Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKAVAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKRS
        G VVVAI GAVIGVANFDPVKRS
Subjt:  GAVVVAIFGAVIGVANFDPVKRS

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]1.14e-6593.5Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALP T+ATHKPLSNDAFFNPLPSFKSRK IAAAP SNGRIVAVRSSLKEKAVAGITAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKRS
        GAVVVAI GAVIGVANFDPVKRS
Subjt:  GAVVVAIFGAVIGVANFDPVKRS

TrEMBL top hitse value%identityAlignment
A0A0A0LWL3 Uncharacterized protein1.9e-4992.68Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKAVAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKRS
        G VVVAI GAVIGVANFDPVKRS
Subjt:  GAVVVAIFGAVIGVANFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC1034923564.4e-54100Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKRS
        GAVVVAIFGAVIGVANFDPVKRS
Subjt:  GAVVVAIFGAVIGVANFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC1114614529.5e-4181.6Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTS VS+ALP T+ATHK LSN AFFNPLP   S +SRK IAAAP S+GR+VAVRSSLKEKA+ G+TAAAL ASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGAVVVAIFGAVIGVANFDPVKR
        AAGG VVVAI GAVIGV+NFDPVKR
Subjt:  AAGGAVVVAIFGAVIGVANFDPVKR

A0A6J1HV97 uncharacterized protein LOC1114677551.2e-3577.87Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MAS  AVSMALP T+A+ K LSNDAFFNPLPS +SRK I AAP    R+V V SSLKEKAV G+TAAAL+A+MVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GAVVVAIFGAVIGVANFDPVKR
        G VV+AI GAVIGV+NFDPVKR
Subjt:  GAVVVAIFGAVIGVANFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC1114848838.1e-4080.8Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPL---PSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTS VS+ALP T ATHK LSN AFFNPL   PS + RK IAAAP SNGR+VAVRSSLKEKA+ G++AAAL ASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPL---PSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGAVVVAIFGAVIGVANFDPVKR
        AAGG VVVAI GAVIGV+NFDPVKR
Subjt:  AAGGAVVVAIFGAVIGVANFDPVKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06520.1 photosystem II subunit X1.8e-2354.4Show/hide
Query:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRI--VAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIA
        MASTSA+S+  P       P     F  PLP     KP  A   + GR   + V++   +KA+ GI+AAAL ASMVIPE+AEAAGSG+SPSLKNFLLSIA
Subjt:  MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRI--VAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIA

Query:  AGGAVVVAIFGAVIGVANFDPVKRS
        +GG V+  I G V+GV+NFDPVKR+
Subjt:  AGGAVVVAIFGAVIGVANFDPVKRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTCCGCTGTTTCAATGGCCTTACCATTCACCCACGCCACCCACAAACCACTCTCCAACGACGCTTTCTTCAACCCATTGCCTTCTTTTAAGTCCCGCAA
GCCCATCGCTGCTGCTCCCATTTCCAACGGAAGGATCGTCGCCGTTCGATCGTCGTTGAAGGAGAAGGCTGTTGCTGGAATCACGGCTGCTGCTCTGGCCGCGTCGATGG
TGATCCCAGAGGTTGCCGAGGCTGCCGGATCCGGAGTGTCGCCTTCGTTGAAGAACTTCTTGCTAAGTATTGCGGCAGGCGGAGCGGTGGTGGTGGCGATATTTGGGGCG
GTCATCGGCGTCGCGAACTTTGACCCGGTGAAGCGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
CTTCTACTTCTCACTGGCCCACTCCCAATTCCCAAAAATCCCCTAATCCCCAATTCACATCTTCCTCAATTTTCCACAAAATCCTCAATTCCCTTCACCTCCATCCATTT
CATCCCATCAATGGCTTCCACTTCCGCTGTTTCAATGGCCTTACCATTCACCCACGCCACCCACAAACCACTCTCCAACGACGCTTTCTTCAACCCATTGCCTTCTTTTA
AGTCCCGCAAGCCCATCGCTGCTGCTCCCATTTCCAACGGAAGGATCGTCGCCGTTCGATCGTCGTTGAAGGAGAAGGCTGTTGCTGGAATCACGGCTGCTGCTCTGGCC
GCGTCGATGGTGATCCCAGAGGTTGCCGAGGCTGCCGGATCCGGAGTGTCGCCTTCGTTGAAGAACTTCTTGCTAAGTATTGCGGCAGGCGGAGCGGTGGTGGTGGCGAT
ATTTGGGGCGGTCATCGGCGTCGCGAACTTTGACCCGGTGAAGCGAAGCTGAGTGGAAATGTGAAGTAAAAGAAAAAAAAAAAGAAAGTAAATTGTAATTTTTGTGTCTT
TCGTTTATTTAATCGTTGTGTTTGTGGCAATGTATGGATTTTTTAGCTGTAAACCTTTTTCATTCAACTCTAAATTTCTTCATCAATCTCTTCATTTATGCCCAAATGAA
TCTTTATTCATCTCCTCAAATCACAAGATTTTTAATTAATTATTTATCAATCCTTATACCCTGAACTTAAAATTTATGTTTAAATAAAAAAAGGTAAGTTATTTTAAATC
ACAAGAGTTTTTATAGCAAAATATAATCGTATCAACATCTTTTTTTTTTCTTTTTCTTGGGGTGAAGGGATAGTTATAAGTTTCTGTGTTGTGCATTTTAAGTATTCATT
CTACTTAATAGTTTCTATTCTAATGAGACTCAAATAATAAATTTAGAAGGGGCATTTTAAATCTAAAAAAGTCTGTCCACCAATTGAAAGTTGGAGATTTAAATTTGACT
ATAAATTTGCTTTATGGCTCAACAAACAAGAATATTGATAGGTTATAGAACGATTTAGGGACTAGTTAGGCATCTTTTCAACCCATGAAAGCATATAAACATCACAATAA
CTTAAGTTTAATATCTAATATCTTGTGATTGTGGTATCTAGACATAAACTCGAGTCCATAAGACAAGGAAGAACTGTGGCTTGAGAGAATAAGGATTTGTTACAAACATT
TTCCTTTTATCATCGATCAATAATTCCAGTTCAACTTGTACAAAGAGAGATGGTCATTAAACAACTTGTTTGCAGAATTTTTTTTAAAAAAAATCCATGAGAAATCGAAA
AAATAACAGAGAAAGCCAAGTCACCAAGACTGAAACACAAGGGCCGTAGTTGTACAATCTATGAAACAGAACCATTTAGAGCAAGATCGTTATAGAGACACAACAAACTG
CAACTTACCATGTTCATCACTGGCCATCTTATTCAACAAAGTGAACTCCGCCCACCTCCAACCTCCCATCATTCAACATATGCCATTATTTTCTTTTCTTTTTTTCATGT
GTACACTACCTAAGAAAAACCGATGCTCCTAAGATGGCCGATGTCAAAAACGTTTCTGACACCGATTGAATCAAAAAGCTTCACACTCCACCATCTCTTCTTCGATACTC
CCCAATCCTCTCAGCCCTAACCATCTCACCAACGTGAACTTGTTATGTAATATTGTTTATATGCATGATATATATTGAATTTCTTTTACTAAATAATCAGTATCTGTGCT
TCCTAGCACACTAGGCATCATGTTGCACGATCACCACGAGATCTGTTTCGCTTTTCTAGGCCACCACATAGTAGGGAACAATGAGAAATTCATAATCAGTAGAGCCTGTA
CACGGTCAACTTCCATTCAAATTTCAATATTGACCGAGAAGGACCAAGAAAAACTATTCCCACGGATACTCCAAAAGGAGCTAATTGTGAAAGATGAAAGCTTTTTAGTT
CACTTCTGACAATTTCCAAATAAAGCAACTAACAAACTTGGTAAGAAAATAACATCAAGGGTGGAGACATAGGCATTTGAAGAAATATATTTGTGACAACTTCTACTAGA
AAGAGGTACAACCTTTCAAAATGTAGAAGCATCACAGTGGATGTTGTCATCTTCCGACACAAAAATTGGTATACAAAACAACCTATTTGCTTTATGGATGACTGGAACAT
ATCAACTAGTCAAAACATGATTATTCACTCATTCAAAAGAGAGAGAAAAACTCAAAGTAGCAATAATCAAATTTTCAAACAGAGACATCTGAAATGTGTCGACAACCTCT
ACTTGAAAAAATGGAGGGAATTTCCAGGTCTTCAAAATGAATAGAGGATTGCCTAATTCATATCGTCATCTTCCGACACAAATTTGGTATAGAAATATCCTATTTGCTTT
ATAGATGACAGAAAAAATATTGCCTCGTCGTTGAAAAGAGAATGATCGATCTAATCAATGAGAAAGATAACCATGTTTGTTATCAATCACCTGTACACTTGATGTAGTAA
AAAGTCAGACAAGGATGAAGAAATTTGTATCCTCCTTGTGTTACAAAGTGAAAGCAAAACAGTTTCACAAAGAATAATGGTATGGAGGAACTTCATTTCGTCATCCTCAG
ACACAGAGTTGATACAAGATAACCAACCTGCTGTAAAGATGACAAATATTGAAACAAAAATGAATCAGTATAAGGGAACAATCCTTCTATAATACTCCATTTTAATCTCA
AACCCTCTTGCTAACAAGAAAAGAACAACCATTGAAGCAAAATATATCACAGAATATTCAATCAATGAAAATAAATCACTACTCCATCAAACAGACGGACAAATAAACCA
ATCTGATCGATTTACCCAATCAAATCCAATGAGCATTTGAAAAACTCACGGAATCAAGCTTTACAACAACTGTAATTGACGAATCAGCAACATCAGAGCAAACAAAGACG
AAGAATTAACGTCTACAGATCACTGTAATAACTCAAAATCATGAAATTAAAAAAGATACAAACAATTGAACTATGAATAAAGATTAAGAACTAAAGAACGGTAGGAGAAA
TGAGAGCATCGTTCATCATGAAGTTGGAGGAAGGAATGTTCTTGAACTTCTGAAACCCTAATTTG
Protein sequenceShow/hide protein sequence
MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGA
VIGVANFDPVKRS