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IVF0024574 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024574
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:12532704..12533142
RNA-Seq ExpressionIVF0024574
SyntenyIVF0024574
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026133.1 hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa]1.63e-4667.19Show/hide
Query:  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLS
        SHQLSS+AKFKILGKIL V+ WD+YDYSHLNEEQIAKWFK N                          SEADLQ VM+ VVNNNSDD KQ+ PEDITNLS
Subjt:  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLS

Query:  DSSVNNIDFENNPYYNFDISDPYLDSQP
        +SSVN+IDFENNPYYNFDI DPYL+SQP
Subjt:  DSSVNNIDFENNPYYNFDISDPYLDSQP

KAA0050626.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.04e-5165.97Show/hide
Query:  YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNS
        YRF L F     F W HQLSS+AKFKILGKILRVK WDKYDYS LNEE+IAKWFKTN                          SEADLQ VME VVNNNS
Subjt:  YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNS

Query:  DDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG
        DDNKQ+DPEDI N+SDSSVN+IDF N+PYYNFDISD YLDSQ G
Subjt:  DDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]7.83e-4457.93Show/hide
Query:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN
        MYRF L F  +  F W HQLSS+AKFKI GKIL VK WDKY+YSHL+E+QI KWFKTN                          SEADLQ +M+ VV+N 
Subjt:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN

Query:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG
         DDNK++DPED    SDSSVNNID +N+ YYNFDI DPYLDSQPG
Subjt:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG

KGN53659.1 hypothetical protein Csa_014527 [Cucumis sativus]2.45e-3553.52Show/hide
Query:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN
        MYRF L F     FYWSHQLS++AKFKIL KILRVK WD      +NEE+IAKWFKTN                          SEADLQ VME V++  
Subjt:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN

Query:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS
         DD+K+ND ED    S+S  N+IDF+N+PYYNFDISDPY DS
Subjt:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS

TYK04653.1 cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa]5.42e-3266.02Show/hide
Query:  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPY
        DKYDYS LNEEQIAKWFKTN                         SEADLQ VME VVNNNSDDNKQ+ PEDI NLSDSSVN+IDF N+PYYNFDI DPY
Subjt:  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPY

Query:  LDS
        LDS
Subjt:  LDS

TrEMBL top hitse value%identityAlignment
A0A0A0KXT5 Uncharacterized protein2.9e-2653.52Show/hide
Query:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN
        MYRF L F     FYWSHQLS++AKFKIL KILRVK WD      +NEE+IAKWFKTN                          SEADLQ VME V++  
Subjt:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN

Query:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS
         DD+K+ND ED    S+S  N+IDF+N+PYYNFDISDPY DS
Subjt:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS

A0A5A7U8X4 Retrotransposable element Tf23.9e-3965.97Show/hide
Query:  YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNS
        YRF L F     F W HQLSS+AKFKILGKILRVK WDKYDYS LNEE+IAKWFKTN                          SEADLQ VME VVNNNS
Subjt:  YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNS

Query:  DDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG
        DDNKQ+DPEDI N+SDSSVN+IDF N+PYYNFDISD YLDSQ G
Subjt:  DDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG

A0A5A7UEA0 Retrotransposable element Tf22.4e-3357.93Show/hide
Query:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN
        MYRF L F  +  F W HQLSS+AKFKI GKIL VK WDKY+YSHL+E+QI KWFKTN                          SEADLQ +M+ VV+N 
Subjt:  MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNN

Query:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG
         DDNK++DPED    SDSSVNNID +N+ YYNFDI DPYLDSQPG
Subjt:  SDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG

A0A5D3BY11 Cysteine-rich RLK RECEPTOR-like protein kinase3.5e-2466.02Show/hide
Query:  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPY
        DKYDYS LNEEQIAKWFKTN                         SEADLQ VME VVNNNSDDNKQ+ PEDI NLSDSSVN+IDF N+PYYNFDI DPY
Subjt:  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPY

Query:  LDS
        LDS
Subjt:  LDS

A0A5D3CI63 Uncharacterized protein2.6e-3567.19Show/hide
Query:  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLS
        SHQLSS+AKFKILGKIL V+ WD+YDYSHLNEEQIAKWFK N                          SEADLQ VM+ VVNNNSDD KQ+ PEDITNLS
Subjt:  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLS

Query:  DSSVNNIDFENNPYYNFDISDPYLDSQP
        +SSVN+IDFENNPYYNFDI DPYL+SQP
Subjt:  DSSVNNIDFENNPYYNFDISDPYLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCGATTCCCTCTTTTATTTTCAAGTACCCTGGATTTTTATTGGAGTCACCAGCTTTCATCCAAAGCCAAATTCAAAATCTTAGGTAAGATTTTGCGTGTTAAATC
GTGGGATAAGTATGACTATTCCCACTTGAACGAAGAACAAATAGCAAAATGGTTTAAAACCAATTCTGAAGCGGACCTCCAAGTGGTCATGGAAATAGTCGTTAACAATA
ATTCTGACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTTTCAGATTCATCTGTCAATAATATCGATTTTGAAAATAATCCTTATTATAATTTTGATATTTCC
GATCCTTATTTAGATTCCCAACCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATCGATTCCCTCTTTTATTTTCAAGTACCCTGGATTTTTATTGGAGTCACCAGCTTTCATCCAAAGCCAAATTCAAAATCTTAGGTAAGATTTTGCGTGTTAAATC
GTGGGATAAGTATGACTATTCCCACTTGAACGAAGAACAAATAGCAAAATGGTTTAAAACCAATTCTGAAGCGGACCTCCAAGTGGTCATGGAAATAGTCGTTAACAATA
ATTCTGACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTTTCAGATTCATCTGTCAATAATATCGATTTTGAAAATAATCCTTATTATAATTTTGATATTTCC
GATCCTTATTTAGATTCCCAACCAGGATGA
Protein sequenceShow/hide protein sequence
MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTNSEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDIS
DPYLDSQPG