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IVF0024634 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024634
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr02:8373597..8373953
RNA-Seq ExpressionIVF0024634
SyntenyIVF0024634
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053177.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]6.03e-1261.9Show/hide
Query:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK
        MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM GK
Subjt:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK

KAA0060164.1 uncharacterized protein E6C27_scaffold542G00330 [Cucumis melo var. makuwa]2.55e-6295.33Show/hide
Query:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
        MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMN KMEEDRGTIEKGTWEQALKWAANCKCK AER DSMDMGA AKMD GLQG
Subjt:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG

Query:  GKNTEEC
        GKNTEEC
Subjt:  GKNTEEC

KAE8652492.1 hypothetical protein Csa_013556 [Cucumis sativus]1.17e-2667.86Show/hide
Query:  IKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCK
        ++ER E NE+DIR+LKD+ L LSKS+E LAEELRE+ VS RREES  SEGSVLKM GKMEED   +E+GTWEQALKWAA+   +
Subjt:  IKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCK

TYK03089.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]1.10e-1161.9Show/hide
Query:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK
        MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM GK
Subjt:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK

TYK04250.1 uncharacterized protein E5676_scaffold758G00280 [Cucumis melo var. makuwa]2.11e-65100Show/hide
Query:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
        MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
Subjt:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG

Query:  GKNTEE
        GKNTEE
Subjt:  GKNTEE

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein6.0e-0849.33Show/hide
Query:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGT
        MAQ+Q++ER E  E+++  LK+++L + KS++ LA+ELREN   +++EESG S+GS++KM GKMEE   T E  T
Subjt:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGT

A0A5A7UFA8 Transposon Tf2-6 polyprotein1.1e-0960Show/hide
Query:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKME
        MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM GK +
Subjt:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKME

A0A5A7UYN1 Uncharacterized protein1.9e-4695.33Show/hide
Query:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
        MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMN KMEEDRGTIEKGTWEQALKWAANCKCK AER DSMDMGA AKMD GLQG
Subjt:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG

Query:  GKNTEEC
        GKNTEEC
Subjt:  GKNTEEC

A0A5D3BYD7 Retrovirus-related Pol polyprotein from transposon 297 family1.4e-0950.59Show/hide
Query:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK-------MEEDRGTIEKGTWEQ
        MAQKQ  ER E NE +I+ LK+++LGL KSVE L EE+ EN  SR +EESG+S GS+LKM GK       M    GT +K  +++
Subjt:  MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGK-------MEEDRGTIEKGTWEQ

A0A5D3BYR5 Uncharacterized protein3.1e-49100Show/hide
Query:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
        MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG
Subjt:  MNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQG

Query:  GKNTEE
        GKNTEE
Subjt:  GKNTEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCAGAAACAAATAAAGGAGAGGTCAGAAATGAATGAGGAGGACATTAGGAAACTGAAAGATTTAGTTTTGGGGTTGTCCAAAAGTGTCGAAAGCCTCGCAGAGGA
ATTGAGAGAAAACATTGTTAGTCGCCGACGGGAAGAATCTGGTAAGTCGGAGGGATCAGTATTGAAAATGAACGGAAAAATGGAAGAAGACCGGGGCACAATTGAGAAAG
GGACTTGGGAGCAAGCGCTTAAATGGGCTGCCAATTGCAAATGCAAGACGGCTGAGAGAGGAGACTCCATGGACATGGGAGCAGACGCAAAAATGGATTCCGGATTGCAA
GGCGGAAAGAATACAGAGGAATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCAGAAACAAATAAAGGAGAGGTCAGAAATGAATGAGGAGGACATTAGGAAACTGAAAGATTTAGTTTTGGGGTTGTCCAAAAGTGTCGAAAGCCTCGCAGAGGA
ATTGAGAGAAAACATTGTTAGTCGCCGACGGGAAGAATCTGGTAAGTCGGAGGGATCAGTATTGAAAATGAACGGAAAAATGGAAGAAGACCGGGGCACAATTGAGAAAG
GGACTTGGGAGCAAGCGCTTAAATGGGCTGCCAATTGCAAATGCAAGACGGCTGAGAGAGGAGACTCCATGGACATGGGAGCAGACGCAAAAATGGATTCCGGATTGCAA
GGCGGAAAGAATACAGAGGAATGTTAG
Protein sequenceShow/hide protein sequence
MAQKQIKERSEMNEEDIRKLKDLVLGLSKSVESLAEELRENIVSRRREESGKSEGSVLKMNGKMEEDRGTIEKGTWEQALKWAANCKCKTAERGDSMDMGADAKMDSGLQ
GGKNTEEC