CuGenDBv2

Gene ID	IVF0024643
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Genome location	chr04:20443002..20443992
RNA-Seq Expression	IVF0024643
Synteny	IVF0024643
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036099.1 retrotransposon protein [Cucumis melo var. makuwa]

8.25e-79

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0046637.1 retrotransposon protein [Cucumis melo var. makuwa]

3.36e-78

97.35

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVA+KELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0050400.1 retrotransposon protein [Cucumis melo var. makuwa]

7.92e-77

97.35

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQ IAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0053616.1 retrotransposon protein [Cucumis melo var. makuwa]

8.25e-79

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

KAA0068155.1 retrotransposon protein [Cucumis melo var. makuwa]

5.75e-77

96.49

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLP CQVRATTVIDCRIKTLKQTFQAI EMRGP+CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRG
        IVA+KELFDNWVRG
Subjt:  IVAEKELFDNWVRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRV1 Retrotransposon protein

3.9e-60

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

A0A5A7VR00 Retrotransposon protein

1.8e-60

96.49

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLP CQVRATTVIDCRIKTLKQTFQAI EMRGP+CSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVRG
        IVA+KELFDNWVRG
Subjt:  IVAEKELFDNWVRG

A0A5D3BCN9 Retrotransposon protein

3.9e-60

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

A0A5D3CWL2 Retrotransposon protein

3.9e-60

98.23

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Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

A0A5D3DCZ1 Retrotransposon protein

3.9e-60

98.23

Show/hide

Query:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC
        MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTF PGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK+TFQAIAEMRGPACSGFGWNDEEKC
Subjt:  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKC

Query:  IVAEKELFDNWVR
        IVAEKELFDNWVR
Subjt:  IVAEKELFDNWVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCTGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACAC
TGAAGCAAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAAT
TGGGTTAGGGGAGGGATTCTGTAG

mRNA sequence

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Protein sequence

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MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN
WVRGGIL

IVF0024643 (gene) of Melon (IVF77) v1 genome