CuGenDBv2

Gene ID	IVF0024665
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr05:24776384..24777059
RNA-Seq Expression	IVF0024665
Synteny	IVF0024665
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.03e-112

97.77

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADKRKINGV FSPNLNLTHILFADDILIFVEDRD+YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGGRPSSSNFWDNVLQKIQKKLS+WKYSQLSKGGRITLINSTLESLP YQMSVFKVPKGIAQKIEASWRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.70e-104

90.5

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLS LL NLA+K KINGVNF PNLNLTHILFADDILIFVED+++YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRA SI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGG+PSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.30e-104

90.5

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLS LL NLA+K KINGVNF PNLNLTHILFADDILIFVED+++YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRA SI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGG+PSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.08e-128

88.84

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGVNF PNLNLTHILFADDILIFVED+D+YVSNLKMILHLFESASGLNINLSKSTIFPINVP DRA SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN-----------DGTKLSPQKR
        YLGMPLGG+PSSSNFWDNVLQKIQKKLSSWKYSQLSKG RITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN           DGTKLSPQKR
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN-----------DGTKLSPQKR

Query:  KEASEFTLSIAQTLPSSVNGYGNS
        KEAS FTLSIAQ LPSSVNG+GNS
Subjt:  KEASEFTLSIAQTLPSSVNGYGNS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.17e-99

93.9

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRD+YVSNLKMILHLFESASGLNINLSKSTIFPINVPTD AKSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKG
        YLGMPLGG+PSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ  ++KV  G
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

1.5e-94

97.77

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADKRKINGV FSPNLNLTHILFADDILIFVEDRD+YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGGRPSSSNFWDNVLQKIQKKLS+WKYSQLSKGGRITLINSTLESLP YQMSVFKVPKGIAQKIEASWRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.4e-87

90.5

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLS LL NLA+K KINGVNF PNLNLTHILFADDILIFVED+++YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRA SI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGG+PSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

1.4e-87

90.5

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLS LL NLA+K KINGVNF PNLNLTHILFADDILIFVED+++YVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRA SI DSWGISKG LPT+
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN
        YLGMPLGG+PSSSNFWDN+LQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

1.4e-79

93.9

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRD+YVSNLKMILHLFESASGLNINLSKSTIFPINVPTD AKSIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKG
        YLGMPLGG+PSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLP YQ  ++KV  G
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKG

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein

1.5e-105

88.84

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Query:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS
        MDYLSRLLNNLADK KINGVNF PNLNLTHILFADDILIFVED+D+YVSNLKMILHLFESASGLNINLSKSTIFPINVP DRA SIADSWGISKGHLPTS
Subjt:  MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTS

Query:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN-----------DGTKLSPQKR
        YLGMPLGG+PSSSNFWDNVLQKIQKKLSSWKYSQLSKG RITLINSTLESLP YQ+SVFKVPKGIAQKIEA WRNFLWN           DGTKLSPQKR
Subjt:  YLGMPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWN-----------DGTKLSPQKR

Query:  KEASEFTLSIAQTLPSSVNGYGNS
        KEAS FTLSIAQ LPSSVNG+GNS
Subjt:  KEASEFTLSIAQTLPSSVNGYGNS

SwissProt top hits

e value

%identity

Alignment

O00370 LINE-1 retrotransposable element ORF2 protein

3.9e-07

24.5

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Query:  LSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTSYLG
        L  L   +  +++I G+       +   LFADD+++++E+      NL  ++  F   SG  IN+ KS  F  N        I      +       YLG
Subjt:  LSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTSYLG

Query:  MPLGGRPSSSNFWDN---VLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSV--FKVPKGIAQKIEASWRNFLWNDGTKLSPQKRKEASEFTLS
        + L  R     F +N   +L++I++  + WK    S  GRI ++   +     Y+ +    K+P     ++E +   F+WN       QKR   ++  LS
Subjt:  MPLGGRPSSSNFWDN---VLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSV--FKVPKGIAQKIEASWRNFLWNDGTKLSPQKRKEASEFTLS

P0C2F6 Putative ribonuclease H protein At1g65750

1.1e-06

27.38

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Query:  MPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWNDGTKLSPQ
        MP+  +  + + +  +L+++  ++S W+   LS  GR+TL  + L S+P + MS   +P+ I  +++   R FLW    +   Q
Subjt:  MPLGGRPSSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWNDGTKLSPQ

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACTATCTCAGCCGTCTGTTGAACAACTTAGCTGATAAAAGAAAAATCAATGGAGTCAATTTCAGTCCCAACCTTAATCTTACCCACATCCTATTTGCGGATGACAT
CCTCATCTTTGTAGAGGATAGGGATGAATATGTATCAAACCTCAAAATGATCCTTCATCTCTTTGAATCAGCCTCGGGCCTTAACATCAACTTATCCAAGTCTACTATCT
TCCCCATAAACGTACCCACAGATCGTGCAAAGTCTATAGCAGACAGCTGGGGAATAAGCAAAGGCCATCTCCCAACATCTTACCTTGGTATGCCCTTAGGAGGGAGGCCT
TCCTCATCAAACTTCTGGGACAATGTGCTTCAAAAAATCCAGAAAAAATTGAGCAGCTGGAAATATTCTCAGTTATCCAAAGGCGGCAGAATCACTCTGATAAACTCAAC
TCTTGAAAGCCTCCCCACATATCAAATGTCGGTCTTCAAGGTTCCCAAAGGTATAGCTCAGAAAATTGAAGCTTCTTGGAGAAATTTCCTTTGGAATGATGGAACCAAAT
TGTCTCCCCAAAAGAGAAAGGAGGCCTCGGAATTCACTCTGTCAATAGCACAAACTTTGCCCTCCTCTGTAAATGGCTATGGAAATTCCTAA

mRNA sequence

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Protein sequence

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MDYLSRLLNNLADKRKINGVNFSPNLNLTHILFADDILIFVEDRDEYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAKSIADSWGISKGHLPTSYLGMPLGGRP
SSSNFWDNVLQKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQMSVFKVPKGIAQKIEASWRNFLWNDGTKLSPQKRKEASEFTLSIAQTLPSSVNGYGNS

IVF0024665 (gene) of Melon (IVF77) v1 genome