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IVF0024730 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024730
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:12284173..12286122
RNA-Seq ExpressionIVF0024730
SyntenyIVF0024730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]2.84e-3440.61Show/hide
Query:  MAKNSQNISSRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQ
        MA+NS+ ISSRTLD N+SS  DN V+EQVNLLTKLFASFVKG+VPKVVSCGV  LLGHHNDQ PE+KE             SNTYN  WRD  N +WG Q
Subjt:  MAKNSQNISSRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQ

Query:  EPKLIITEIVSKLALSSNNFKTDFEKNLVKLS------EQTVNSTRAMKNDIETMKASIFELGDMLNQLVT-----HVPKTEGKGKLSTQLNHANVSAIT
        EPK   T   S  + S      +F+ N+V  S         V+ +    + +E++K    E  D  N+L+      HV     K K S       +  +T
Subjt:  EPKLIITEIVSKLALSSNNFKTDFEKNLVKLS------EQTVNSTRAMKNDIETMKASIFELGDMLNQLVT-----HVPKTEGKGKLSTQLNHANVSAIT

Query:  LRSEKW---DRTKSSPFTPQICVLGGKEH
          ++++   D   ++   P+   +   EH
Subjt:  LRSEKW---DRTKSSPFTPQICVLGGKEH

KAA0062777.1 Peptidase A1 [Cucumis melo var. makuwa]6.14e-2852.85Show/hide
Query:  EVPKVVSCGVCDLLGHHNDQCPEIKESNTYNFRWRDDSNFKWGLQEPKLIITEIVSKLALSSNNFKTDFEKN--LVKLSEQTVNSTRAMKNDIETMKASI
        EVPKV+SCGVCD LG HNDQCPE+KE +      R+DS                       SN + +    +  L KLSE TVNST  MKNDIE MKASI
Subjt:  EVPKVVSCGVCDLLGHHNDQCPEIKESNTYNFRWRDDSNFKWGLQEPKLIITEIVSKLALSSNNFKTDFEKN--LVKLSEQTVNSTRAMKNDIETMKASI

Query:  FELGDMLNQLVTHVPKTEGKGKL
        FELGD LNQL T++ K EGKGKL
Subjt:  FELGDMLNQLVTHVPKTEGKGKL

KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]1.61e-3759.7Show/hide
Query:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV
        +SNTYNF WR+  N  WG QEPK               + EI+SKLALSSN+ K DFEKNLVKLSEQTVNST+AMKNDIE MKASI ELGD LNQL THV
Subjt:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV

Query:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS
         K E K KL  Q NHAN      + EK  +T  S
Subjt:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]2.01e-7366.67Show/hide
Query:  MAKNSQNIS-SRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGL
        MAKNSQN + SRTLD NSS  CDN VKEQVNLLTK+F SFVKGEVPKVVSCGVC LLGHHNDQCPEIKE             SN YN  WRDD + +WG 
Subjt:  MAKNSQNIS-SRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGL

Query:  QEPK------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHVPKTEGKGKLSTQLNHANVSA
        QEPK              + EIVSKLA SSNNFK+DFEKNL KLSE TV+ST A+KND+E MKASI ELG+ L+QL     KTEGKGKL  Q NHANVSA
Subjt:  QEPK------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHVPKTEGKGKLSTQLNHANVSA

Query:  ITLRSEK
        ITLRS K
Subjt:  ITLRSEK

TYK27330.1 hypothetical protein E5676_scaffold394G00160 [Cucumis melo var. makuwa]5.23e-3959.7Show/hide
Query:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV
        +SNTYNF WR+  N  WG QEPK               + EI+SKLALSSN+ K DFEKNLVKLSEQTVNST+AMKNDIE MKASI ELGD LNQL THV
Subjt:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV

Query:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS
         K E K KL  Q NHAN      + EK  +T  S
Subjt:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ8 Uncharacterized protein8.4e-6167.01Show/hide
Query:  NSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQEPK------------
        NSS  CDN VKEQVNLLTK+F SFVKGEVPKVVSCGVC LLGHHNDQCPEIKE             SN YN  WRDD + +WG QEPK            
Subjt:  NSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQEPK------------

Query:  LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHVPKTEGKGKLSTQLNHANVSAITLRSEKWDR
          + EIVSKLA SSNNFK+DFEKNL KLSE TV+ST A+KND+E MKASI ELG+ L+QL     KTEGKGKL  Q NHANVSAITLRSEKWDR
Subjt:  LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHVPKTEGKGKLSTQLNHANVSAITLRSEKWDR

A0A5A7V727 Peptidase A17.7e-2252.85Show/hide
Query:  EVPKVVSCGVCDLLGHHNDQCPEIKESNTYNFRWRDDSNFKWGLQEPKLIITEIVSKLALSSNNFKTDFEKN--LVKLSEQTVNSTRAMKNDIETMKASI
        EVPKV+SCGVCD LG HNDQCPE+KE +      R+DS                       SN + +    +  L KLSE TVNST  MKNDIE MKASI
Subjt:  EVPKVVSCGVCDLLGHHNDQCPEIKESNTYNFRWRDDSNFKWGLQEPKLIITEIVSKLALSSNNFKTDFEKN--LVKLSEQTVNSTRAMKNDIETMKASI

Query:  FELGDMLNQLVTHVPKTEGKGKL
        FELGD LNQL T++ K EGKGKL
Subjt:  FELGDMLNQLVTHVPKTEGKGKL

A0A5A7VEJ8 Uncharacterized protein2.0e-3059.7Show/hide
Query:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV
        +SNTYNF WR+  N  WG QEPK               + EI+SKLALSSN+ K DFEKNLVKLSEQTVNST+AMKNDIE MKASI ELGD LNQL THV
Subjt:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV

Query:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS
         K E K KL  Q NHAN      + EK  +T  S
Subjt:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family6.5e-2940.61Show/hide
Query:  MAKNSQNISSRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQ
        MA+NS+ ISSRTLD N+SS  DN V+EQVNLLTKLFASFVKG+VPKVVSCGV  LLGHHNDQ PE+KE             SNTYN  WRD  N +WG Q
Subjt:  MAKNSQNISSRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKE-------------SNTYNFRWRDDSNFKWGLQ

Query:  EPKLIITEIVSKLALSSNNFKTDFEKNLVKLS------EQTVNSTRAMKNDIETMKASIFELGDMLNQLV-----THVPKTEGKGKLSTQLNHANVSAIT
        EPK   T   S  + S      +F+ N+V  S         V+ +    + +E++K    E  D  N+L+      HV     K K S       +  +T
Subjt:  EPKLIITEIVSKLALSSNNFKTDFEKNLVKLS------EQTVNSTRAMKNDIETMKASIFELGDMLNQLV-----THVPKTEGKGKLSTQLNHANVSAIT

Query:  LRSEKW---DRTKSSPFTPQICVLGGKEH
          ++++   D   ++   P+   +   EH
Subjt:  LRSEKW---DRTKSSPFTPQICVLGGKEH

A0A5D3DVM3 Uncharacterized protein2.0e-3059.7Show/hide
Query:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV
        +SNTYNF WR+  N  WG QEPK               + EI+SKLALSSN+ K DFEKNLVKLSEQTVNST+AMKNDIE MKASI ELGD LNQL THV
Subjt:  ESNTYNFRWRDDSNFKWGLQEPK-------------LIITEIVSKLALSSNNFKTDFEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHV

Query:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS
         K E K KL  Q NHAN      + EK  +T  S
Subjt:  PKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAAATTCTCAAAATATTTCTAGTAGAACACTTGATTATAATTCTTCTTCATTTTGTGATAATTTTGTTAAAGAACAAGTGAATTTACTAACCAAGCTTTTTGC
TTCTTTTGTGAAGGGGGAGGTTCCTAAAGTTGTCTCTTGTGGAGTATGTGACTTGCTAGGCCACCACAATGATCAATGTCCAGAGATTAAAGAGAGTAACACCTACAACT
TTAGATGGCGGGATGATTCAAATTTTAAGTGGGGCCTTCAAGAACCAAAACTTATCATCACAGAAATAGTTTCCAAGTTAGCTCTTAGCTCAAATAATTTTAAAACTGAT
TTTGAGAAAAACTTAGTTAAGTTGAGTGAGCAAACTGTTAATTCAACTAGAGCCATGAAAAATGATATAGAAACCATGAAAGCATCCATTTTCGAGTTAGGAGATATGCT
TAATCAATTAGTAACACATGTTCCTAAAACGGAAGGAAAAGGTAAACTTTCCACTCAACTCAACCATGCAAATGTGAGTGCTATTACTTTAAGAAGTGAAAAATGGGATC
GAACTAAAAGTTCTCCCTTCACACCTCAAATATGTGTTCTTGGGGGAAAAGAACACATATCCTGTCATTATTTCGAAGGAGCTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAAATTCTCAAAATATTTCTAGTAGAACACTTGATTATAATTCTTCTTCATTTTGTGATAATTTTGTTAAAGAACAAGTGAATTTACTAACCAAGCTTTTTGC
TTCTTTTGTGAAGGGGGAGGTTCCTAAAGTTGTCTCTTGTGGAGTATGTGACTTGCTAGGCCACCACAATGATCAATGTCCAGAGATTAAAGAGAGTAACACCTACAACT
TTAGATGGCGGGATGATTCAAATTTTAAGTGGGGCCTTCAAGAACCAAAACTTATCATCACAGAAATAGTTTCCAAGTTAGCTCTTAGCTCAAATAATTTTAAAACTGAT
TTTGAGAAAAACTTAGTTAAGTTGAGTGAGCAAACTGTTAATTCAACTAGAGCCATGAAAAATGATATAGAAACCATGAAAGCATCCATTTTCGAGTTAGGAGATATGCT
TAATCAATTAGTAACACATGTTCCTAAAACGGAAGGAAAAGGTAAACTTTCCACTCAACTCAACCATGCAAATGTGAGTGCTATTACTTTAAGAAGTGAAAAATGGGATC
GAACTAAAAGTTCTCCCTTCACACCTCAAATATGTGTTCTTGGGGGAAAAGAACACATATCCTGTCATTATTTCGAAGGAGCTTACTGA
Protein sequenceShow/hide protein sequence
MAKNSQNISSRTLDYNSSSFCDNFVKEQVNLLTKLFASFVKGEVPKVVSCGVCDLLGHHNDQCPEIKESNTYNFRWRDDSNFKWGLQEPKLIITEIVSKLALSSNNFKTD
FEKNLVKLSEQTVNSTRAMKNDIETMKASIFELGDMLNQLVTHVPKTEGKGKLSTQLNHANVSAITLRSEKWDRTKSSPFTPQICVLGGKEHISCHYFEGAY