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IVF0024736 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024736
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionzf-LSD1 domain-containing protein
Genome locationtig00001329:256804..258832
RNA-Seq ExpressionIVF0024736
SyntenyIVF0024736
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]1.70e-4292.41Show/hide
Query:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        R GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTS
Subjt:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
XP_008448702.2 PREDICTED: protein LSD1 isoform X2 [Cucumis melo]2.48e-24100Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]2.91e-50100Show/hide
Query:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
Subjt:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
XP_031738784.1 protein LSD1 [Cucumis sativus]2.34e-2395.56Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTS
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
XP_038903355.1 protein LSD1-like [Benincasa hispida]4.18e-1880Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        MPFP VTCC+N I+CSGCK +LIYPAGAT ICCALCH V+PVPTS
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
TrEMBL top hitse value%identityAlignment
A0A0A0L592 zf-LSD1 domain-containing protein5.8e-4791.35Show/hide
Query:  MPRDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATLCSCTVVGRQVFNVL
        MPR GRNEDKARC L LRNRVLKKF+WKRSFFNITKMPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSVAAT CSCTVVGR+V+NVL
Subjt:  MPRDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATLCSCTVVGRQVFNVL

Query:  VVAP
        VVAP
Subjt:  VVAP
A0A1S3BJQ2 protein LSD1 isoform X29.6e-1887.27Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS---VAATLCS
        MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS   +A  +CS
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS---VAATLCS
A0A1S3BKC0 protein LOL1 isoform X13.7e-3892.13Show/hide
Query:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS---VAATLCS
        RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS   +A  +CS
Subjt:  RDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS---VAATLCS
A0A3Q0FGM9 protein LOL1 isoform X27.6e-0765.85Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATL
        QNQ++CSGC+N+L+YP GATS+CCA+CHAVT VP    A L
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATL
A0A6J1CWA3 protein LSD1-like2.7e-1275Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPT
        MP P VTCCQ++++CSGCKN+LIYP GATSICC LCH+V+PVPT
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPT
SwissProt top hitse value%identityAlignment
Q0J7V9 Protein LSD11.7e-0851.85Show/hide
Query:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
        +PF      Q+Q++CSGC+N+L+YPAGATS+CCA+C  VT VP   T +A  +C
Subjt:  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
Q2QMB3 Protein LOL23.6e-0658.33Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
        Q+QI+C GC+N+L+YP GA S+CCA+CHAV+    S
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTS
Q69UP7 Protein LOL11.1e-0758.14Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATLCS
        Q+Q++CSGC+N+L+YPAGATSICCA+C  VT VP     + C+
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATLCS
Q6ASS2 Protein LOL34.7e-0661.76Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP
        Q+QI+C GC+++L YP+GA S+CCALC A+T VP
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP
Q93ZB1 Protein LOL13.9e-0852.83Show/hide
Query:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
        P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP   T +A  +C
Subjt:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 19.5e-1050Show/hide
Query:  NITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
        N   + F   T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP   T +A  +C
Subjt:  NITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
AT1G32540.2 lsd one like 12.8e-0952.83Show/hide
Query:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
        P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP   T +A  +C
Subjt:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
AT1G32540.3 lsd one like 12.8e-0952.83Show/hide
Query:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
        P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP   T +A  +C
Subjt:  PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP---TSVAATLC
AT4G20380.1 LSD1 zinc finger family protein2.4e-0550Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP
        Q+Q++C GC+N+L+YP GA+++ CALC+ +  VP
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP
AT4G20380.2 LSD1 zinc finger family protein2.4e-0550Show/hide
Query:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP
        Q+Q++C GC+N+L+YP GA+++ CALC+ +  VP
Subjt:  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGAGATGGTAGAAACGAAGACAAAGCACGGTGTAGTCTTTCCCTGAGAAACCGAGTGTTGAAGAAATTCAGCTGGAAAAGAAGTTTCTTCAACATCACAAAAAT
GCCGTTTCCATCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATATGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATG
CTGTTACTCCTGTTCCAACTTCTGTGGCTGCTACACTCTGCTCATGTACAGTCGTGGGGCGACAAGTGTTCAATGTTCTTGTTGTCGCACCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGAGATGGTAGAAACGAAGACAAAGCACGGTGTAGTCTTTCCCTGAGAAACCGAGTGTTGAAGAAATTCAGCTGGAAAAGAAGTTTCTTCAACATCACAAAAAT
GCCGTTTCCATCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATATGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATG
CTGTTACTCCTGTTCCAACTTCTGTGGCTGCTACACTCTGCTCATGTACAGTCGTGGGGCGACAAGTGTTCAATGTTCTTGTTGTCGCACCATAA
Protein sequenceShow/hide protein sequence
MPRDGRNEDKARCSLSLRNRVLKKFSWKRSFFNITKMPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSVAATLCSCTVVGRQVFNVLVVAP