; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0024757 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024757
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Genome locationchr01:16969337..16969897
RNA-Seq ExpressionIVF0024757
SyntenyIVF0024757
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036621.1 retrotransposon protein [Cucumis melo var. makuwa]1.33e-8894.12Show/hide
Query:  MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW--------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI
        MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW        CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI
Subjt:  MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW--------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI

Query:  YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
Subjt:  YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

KAA0037854.1 retrotransposon protein [Cucumis melo var. makuwa]1.35e-7273.12Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        MTF IP  NVHAS IDSRIKLLKRMFH LAEMRGPTC  FGWND QKCIVAEKEVFDDW         LLNK FPHYDEL YVFGKD V E   +TF +V
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        GSND  GYE FV D  SD  FQ +YSQGLNMS DELM TRT RVSEGRYVSSG KRK  G
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

KAA0048317.1 retrotransposon protein [Cucumis melo var. makuwa]9.52e-7269.62Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC------LLNKSFPHYDELSYVFGKDLVTEALVKTFADVGS
        M F IP CN+HASTIDSRIKL+KRMFH LAEMRGP CS FGWND +KCIVAEKEVFDDW       LLNKSF HYDELSYV GKD  T    ++FAD+GS
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC------LLNKSFPHYDELSYVFGKDLVTEALVKTFADVGS

Query:  NDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        NDP GY+ F  D A D  F P+YS GLNMSPD+LM TRT+RVSE R VSSG KRK  G
Subjt:  NDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]6.20e-7874.38Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        M F IP  NVHASTIDSRIKLLKRMFH + EMRGPTCS FGWND QKCIVAEKEVFDDW         LLNKSFPHYDELSYVF KD  T    ++FADV
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        GSNDPTGY+ F  + ASD  FQP+YS+GLNMSPDELMGTRTARVSEGRYVSSG K+K  G
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

KAA0052248.1 retrotransposon protein [Cucumis melo var. makuwa]1.01e-7471.88Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        M F IP CNVHASTIDSRIKLLKRMFH LAEMRGPTCS F WND QKCIV EK+ F+DW         LL K FPHYDELSYVFGKD    A V+TFAD+
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        G NDP  YE F  + A DM FQP+YSQGLNMSPDELMGTRT RVS+ RYVSSG KRK RG
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

TrEMBL top hitse value%identityAlignment
A0A5A7T4Z3 Retrotransposon protein1.1e-6794.12Show/hide
Query:  MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW--------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI
        MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW        CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI
Subjt:  MFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW--------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASDMKFQPI

Query:  YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
Subjt:  YSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

A0A5A7TZA5 Retrotransposon protein2.7e-6174.38Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        M F IP  NVHASTIDSRIKLLKRMFH + EMRGPTCS FGWND QKCIVAEKEVFDDW         LLNKSFPHYDELSYVF KD  T    ++FADV
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        GSNDPTGY+ F  + ASD  FQP+YS+GLNMSPDELMGTRTARVSEGRYVSSG K+K  G
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

A0A5A7U252 Retrotransposon protein9.0e-5769.62Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGS
        M F IP CN+HASTIDSRIKL+KRMFH LAEMRGP CS FGWND +KCIVAEKEVFDDW       LLNKSF HYDELSYV GKD  T    ++FAD+GS
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDW------CLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGS

Query:  NDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        NDP GY+ F  D A D  F P+YS GLNMSPD+LM TRT+RVSE R VSSG KRK  G
Subjt:  NDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

A0A5D3BSM9 Retrotransposon protein2.1e-5871.88Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        M F IP CNVHASTIDSRIKLLKRMFH LAEMRGPTCS F WND QKCIV EK+ F+DW         LL K FPHYDELSYVFGKD    A V+TFAD+
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        G NDP  YE F  + A DM FQP+YSQGLNMSPDELMGTRT RVS+ RYVSSG KRK RG
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

A0A5D3CHG6 Retrotransposon protein3.1e-5773.12Show/hide
Query:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV
        MTF IP  NVHAS IDSRIKLLKRMFH LAEMRGPTC  FGWND QKCIVAEKEVFDDW         LLNK FPHYDEL YVFGKD V E   +TF +V
Subjt:  MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWC--------LLNKSFPHYDELSYVFGKDLVTEALVKTFADV

Query:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG
        GSND  GYE FV D  SD  FQ +YSQGLNMS DELM TRT RVSEGRYVSSG KRK  G
Subjt:  GSNDPTGYEVFVTDTASDMKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTTCAATATCCCAGATTGTAACGTCCATGCTTCAACGATCGATAGTCGAATAAAATTATTGAAGAGAATGTTCCATGTGCTAGCAGAGATGCGTGGCCCAACCTG
CAGTGAGTTTGGGTGGAACGATGGACAAAAGTGCATCGTCGCAGAGAAAGAAGTGTTTGACGATTGGTGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGT
ACGTGTTTGGCAAAGATCTTGTGACGGAAGCCCTGGTTAAGACTTTTGCGGATGTGGGGTCAAACGATCCTACTGGGTATGAGGTATTTGTCACTGACACTGCGTCAGAT
ATGAAGTTCCAACCTATATACAGTCAGGGATTGAACATGTCGCCTGACGAATTAATGGGAACAAGAACCGCTCGGGTAAGTGAGGGTAGGTATGTTTCGAGTGGGTTTAA
GCGGAAACATAGAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTTCAATATCCCAGATTGTAACGTCCATGCTTCAACGATCGATAGTCGAATAAAATTATTGAAGAGAATGTTCCATGTGCTAGCAGAGATGCGTGGCCCAACCTG
CAGTGAGTTTGGGTGGAACGATGGACAAAAGTGCATCGTCGCAGAGAAAGAAGTGTTTGACGATTGGTGCCTCCTTAATAAGTCGTTTCCCCACTATGACGAACTGTCGT
ACGTGTTTGGCAAAGATCTTGTGACGGAAGCCCTGGTTAAGACTTTTGCGGATGTGGGGTCAAACGATCCTACTGGGTATGAGGTATTTGTCACTGACACTGCGTCAGAT
ATGAAGTTCCAACCTATATACAGTCAGGGATTGAACATGTCGCCTGACGAATTAATGGGAACAAGAACCGCTCGGGTAAGTGAGGGTAGGTATGTTTCGAGTGGGTTTAA
GCGGAAACATAGAGGATAA
Protein sequenceShow/hide protein sequence
MTFNIPDCNVHASTIDSRIKLLKRMFHVLAEMRGPTCSEFGWNDGQKCIVAEKEVFDDWCLLNKSFPHYDELSYVFGKDLVTEALVKTFADVGSNDPTGYEVFVTDTASD
MKFQPIYSQGLNMSPDELMGTRTARVSEGRYVSSGFKRKHRG