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IVF0024770 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024770
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Genome locationchr09:12238640..12240459
RNA-Seq ExpressionIVF0024770
SyntenyIVF0024770
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026022.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.33e-3474.12Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK
        MLPD FS GIGRE +SLEGELWCDPK SKRW MLPTS +RSS  +NHWKCTCS+GN LS R S  RPKK RA +PRTQFS PG K
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK

KAA0040927.1 hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa]4.25e-5248Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRSPDGFFPFLRIGH
        MLP TF +GI  +VSS EGEL                               S+GN L  R   VRPKKMRARIP TQFS PG K   P     +LR   
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRSPDGFFPFLRIGH

Query:  KSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDF---------------RGSS
                                       S+LVG RT VR K +QK+ N S EWRTLVRCQKPLKMHLQ++K  ELEDF               R SS
Subjt:  KSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDF---------------RGSS

Query:  QENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHS
         ENA ENALDSVFSS G+K+  D FFPLLRIGH+SFDLRGSYSEDFNPHS
Subjt:  QENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHS

KAA0057641.1 hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]6.32e-3676.67Show/hide
Query:  MVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWHA
        M N SNEW+TLVRCQKPL+M+LQR+K  EL+DF  SSQENA +NA DS FSSWGKKRSP GFF LLRIGHKSFDL+GSY EDFN HSWH+
Subjt:  MVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWHA

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.85e-5545.51Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK---------------
        MLPD FS+GIG+E SSLEGELWC+PK SKRW+MLPTS +RSS ++NH KCT  +GN LS R  S  PKK RAR+PRTQFS  G K               
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK---------------

Query:  KRS-------------PDGFFPFLRIGHKSFDLR-----------GSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKM----VNDSNEWR
        KR+              DG   F R+G +S  +R           G  S  F+     T     PR +  S  +G ++   P T+  +    V     WR
Subjt:  KRS-------------PDGFFPFLRIGHKSFDLR-----------GSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKM----VNDSNEWR

Query:  T----------------LVRCQKPLKMH----LQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWH
                          V   +P+       L  KK  EL+DF  SSQENA EN LDSVFSSWGKK+SPDGFFPL RIGHKS D RGSYSEDFNP+SWH
Subjt:  T----------------LVRCQKPLKMH----LQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWH

Query:  A
        A
Subjt:  A

TYK22521.1 uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]3.64e-4765.75Show/hide
Query:  PRTQFSSPGGKKRSPDGFFPFLRIGHKSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKK
        P + FSS   KKRSPDGFFP LR GHK                             GSELVGGRTVVR KT+QKM N SNEWR LVRCQKPL+MHLQR+K
Subjt:  PRTQFSSPGGKKRSPDGFFPFLRIGHKSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKK

Query:  CVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKS
         VELEDFR SSQEN  ENA DS FSSWGKKRSPDGFFPLLRIGHKS
Subjt:  CVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKS

TrEMBL top hitse value%identityAlignment
A0A5A7UVV0 Uncharacterized protein3.5e-3176.67Show/hide
Query:  MVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWHA
        M N SNEW+TLVRCQKPL+M+LQR+K  EL+DF  SSQENA +NA DS FSSWGKKRSP GFF LLRIGHKSFDL+GSY EDFN HSWH+
Subjt:  MVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWHA

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein4.1e-4845.51Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK---------------
        MLPD FS+GIG+E SSLEGELWC+PK SKRW+MLPTS +RSS ++NH KCT  +GN LS R  S  PKK RAR+PRTQFS  G K               
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGK---------------

Query:  KRS-------------PDGFFPFLRIGHKSFDLR-----------GSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQK----MVNDSNEWR
        KR+              DG   F R+G +S  +R           G  S  F+     T     PR +  S  +G ++   P T+      +V     WR
Subjt:  KRS-------------PDGFFPFLRIGHKSFDLR-----------GSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQK----MVNDSNEWR

Query:  T----------------LVRCQKPLK----MHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWH
                          V   +P+       L  KK  EL+DF  SSQENA EN LDSVFSSWGKK+SPDGFFPL RIGHKS D RGSYSEDFNP+SWH
Subjt:  T----------------LVRCQKPLK----MHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHSWH

Query:  A
        A
Subjt:  A

A0A5A7VGB1 Mitochondrial intermembrane space import and assembly protein 402.1e-2873.86Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRS
        MLPDTFS GIGRE SSLEGELWCDPK SKRW  LPTS +RSS V+NHWKCTCS+GN LS R S  RPKK  A +PRTQFS PG  KR+
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRS

A0A5D3CGX3 Uncharacterized protein8.9e-4348Show/hide
Query:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRSPDGFFPFLRIGH
        MLP TF +GI  +VSS EGEL                               S+GN L  R   VRPKKMRARIP TQFS PG K   P     +LR   
Subjt:  MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRSPDGFFPFLRIGH

Query:  KSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKKCVELED---------------FRGSS
                                       S+LVG RT VR K +QK+ N S EWRTLVRCQKPLKMHLQ++K  ELED               FR SS
Subjt:  KSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKKCVELED---------------FRGSS

Query:  QENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHS
         ENA ENALDSVFSS G+K+  D FFPLLRIGH+SFDLRGSYSEDFNPHS
Subjt:  QENARENALDSVFSSWGKKRSPDGFFPLLRIGHKSFDLRGSYSEDFNPHS

A0A5D3DFP2 Uncharacterized protein4.1e-4065.75Show/hide
Query:  PRTQFSSPGGKKRSPDGFFPFLRIGHKSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKK
        P + FSS   KKRSPDGFFP LR GH                            K GSELVGGRTVVR KT+QKM N SNEWR LVRCQKPL+MHLQR+K
Subjt:  PRTQFSSPGGKKRSPDGFFPFLRIGHKSFDLRGSYSEDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKK

Query:  CVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKS
         VELEDFR SSQEN  ENA DS FSSWGKKRSPDGFFPLLRIGHKS
Subjt:  CVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCCTGACACGTTTTCCCAAGGTATAGGTCGGGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAAGGATCCAAAAGATGGTCAATGCTTCCAACGAG
TTGCAAACGCTCGTCCGTTGTCAAAAACCACTGGAAATGCACTTGCAGCCAAGGAAACGAGCTGAGCTTGAGGAATTCCAGTGTTCGTCCAAAGAAAATGAGAGCAAGAA
TTCCCCGAACTCAGTTTTCAAGTCCTGGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCC
GAGGACTTCAACCCACACTCCTGGCATACTCCCACACACGCTTTCCCAAGGTATAAGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGATCCA
AAAGATGGTCAATGATTCCAATGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGAAAATGCACTTGCAGCGAAAGAAATGTGTTGAGCTCGAGGACTTCCGTGGTT
CGTCCCAAGAAAATGCGAGAGAGAATGCCCTTGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCCCCTGACGGTTTCTTTCCTTTGCTTCGTATTGGTCATAAGTCT
TTCGATCTTCGGGGCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCCTGACACGTTTTCCCAAGGTATAGGTCGGGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAAGGATCCAAAAGATGGTCAATGCTTCCAACGAG
TTGCAAACGCTCGTCCGTTGTCAAAAACCACTGGAAATGCACTTGCAGCCAAGGAAACGAGCTGAGCTTGAGGAATTCCAGTGTTCGTCCAAAGAAAATGAGAGCAAGAA
TTCCCCGAACTCAGTTTTCAAGTCCTGGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCC
GAGGACTTCAACCCACACTCCTGGCATACTCCCACACACGCTTTCCCAAGGTATAAGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGATCCA
AAAGATGGTCAATGATTCCAATGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGAAAATGCACTTGCAGCGAAAGAAATGTGTTGAGCTCGAGGACTTCCGTGGTT
CGTCCCAAGAAAATGCGAGAGAGAATGCCCTTGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCCCCTGACGGTTTCTTTCCTTTGCTTCGTATTGGTCATAAGTCT
TTCGATCTTCGGGGCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCTCTGA
Protein sequenceShow/hide protein sequence
MLPDTFSQGIGREVSSLEGELWCDPKGSKRWSMLPTSCKRSSVVKNHWKCTCSQGNELSLRNSSVRPKKMRARIPRTQFSSPGGKKRSPDGFFPFLRIGHKSFDLRGSYS
EDFNPHSWHTPTHAFPRYKSGSELVGGRTVVRPKTIQKMVNDSNEWRTLVRCQKPLKMHLQRKKCVELEDFRGSSQENARENALDSVFSSWGKKRSPDGFFPLLRIGHKS
FDLRGSYSEDFNPHSWHAL