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IVF0024794 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024794
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3
Genome locationchr12:14814813..14815055
RNA-Seq ExpressionIVF0024794
SyntenyIVF0024794
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033141.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]3.16e-4297.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
KAA0047405.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]5.69e-4198.73Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ
TYK14912.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]2.25e-4197.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
TYK17092.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]3.10e-4197.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
TYK23452.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]5.33e-4197.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein2.4e-3298.75Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ+
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
A0A5A7ULG7 U4/U6 small nuclear ribonucleoprotein Prp36.9e-3297.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
A0A5D3CTY3 U4/U6 small nuclear ribonucleoprotein Prp36.9e-3297.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
A0A5D3CZW3 U4/U6 small nuclear ribonucleoprotein Prp36.9e-3297.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
A0A5D3D4Z0 U4/U6 small nuclear ribonucleoprotein Prp36.9e-3297.5Show/hide
Query:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
        MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDAL KAKKALQM
Subjt:  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM
SwissProt top hitse value%identityAlignment
Q9C7E7 Protein RDM163.0e-0865.67Show/hide
Query:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQM
        PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+
Subjt:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQM
Arabidopsis top hitse value%identityAlignment
AT1G28060.1 Pre-mRNA-splicing factor 32.1e-0965.67Show/hide
Query:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQM
        PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+
Subjt:  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCGGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAA
GGGAGTTAGTATTACTAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAG
CTAAGAAAGCTTTACAGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCGGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAA
GGGAGTTAGTATTACTAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAG
CTAAGAAAGCTTTACAGATGTAG
Protein sequenceShow/hide protein sequence
MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM