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IVF0024856 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024856
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:9749503..9750590
RNA-Seq ExpressionIVF0024856
SyntenyIVF0024856
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062777.1 Peptidase A1 [Cucumis melo var. makuwa]5.12e-3660.5Show/hide
Query:  EVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELR
        EV KV SC VC  LG HN QC ELK+V+ + GFRRNDSQSNTYN G     I                  +AK SEHT+ STG +KNDIEIMKASIFEL 
Subjt:  EVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELR

Query:  DKLNQLATHVLKTEGKGKL
        DKLNQLAT++LK EGKGKL
Subjt:  DKLNQLATHVLKTEGKGKL

KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]6.82e-3661.11Show/hide
Query:  MGGFRRNDSQSNTYNFG----------------------------TYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD
        MGGFRRNDSQSNTYNFG                            TY+EEI+ KLALSSNS K +FEKN+ K SE T+ ST A+KNDIEIMKASI EL D
Subjt:  MGGFRRNDSQSNTYNFG----------------------------TYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD

Query:  KLNQLATHVLKTEGKGKLSAQPNHAN
        KLNQLATHV+K E K KL AQPNHAN
Subjt:  KLNQLATHVLKTEGKGKLSAQPNHAN

KAE8645971.1 hypothetical protein Csa_015450 [Cucumis sativus]6.86e-3342.54Show/hide
Query:  QVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDS----QSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKS
        QVN LTKLFTS V+ E+ K  SC + G   H N QC   K+V+ MGG+  ++S      ++ + GTY+EE++  +A S +SF+T+FEKN+AK SE+T+  
Subjt:  QVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDS----QSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKS

Query:  TG------------------AIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSKILNKNDD
        TG                  A+ ND+E MKASI E+ +KL+QLAT++ +TE   +L A   HA  + +TL S KI N  DD
Subjt:  TG------------------AIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSKILNKNDD

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]4.51e-6965.08Show/hide
Query:  MKEQVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFG---------------------------TYVEEIVFK
        +KEQVNLLTK+FTSFVKGEV KV SC VCGLLGHHN QC E+K+V+ +GG+RRNDSQSN YN G                           TY+EEIV K
Subjt:  MKEQVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFG---------------------------TYVEEIVFK

Query:  LALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSKILNKNDD
        LA SSN+FK++FEKN+AK SE+T+ STGAIKND+E MKASI EL +KL+QLA   LKTEGKGKL AQPNHANVSAITLRS K+LN+NDD
Subjt:  LALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSKILNKNDD

TYK27330.1 hypothetical protein E5676_scaffold394G00160 [Cucumis melo var. makuwa]2.42e-3761.11Show/hide
Query:  MGGFRRNDSQSNTYNFG----------------------------TYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD
        MGGFRRNDSQSNTYNFG                            TY+EEI+ KLALSSNS K +FEKN+ K SE T+ ST A+KNDIEIMKASI EL D
Subjt:  MGGFRRNDSQSNTYNFG----------------------------TYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD

Query:  KLNQLATHVLKTEGKGKLSAQPNHAN
        KLNQLATHV+K E K KL AQPNHAN
Subjt:  KLNQLATHVLKTEGKGKLSAQPNHAN

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ8 Uncharacterized protein6.2e-5464.84Show/hide
Query:  MKEQVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNF---------------------------GTYVEEIVFK
        +KEQVNLLTK+FTSFVKGEV KV SC VCGLLGHHN QC E+K+V+ +GG+RRNDSQSN YN                            GTY+EEIV K
Subjt:  MKEQVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNF---------------------------GTYVEEIVFK

Query:  LALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSK
        LA SSN+FK++FEKN+AK SE+T+ STGAIKND+E MKASI EL +KL+QLA   LKTEGKGKL AQPNHANVSAITLRS K
Subjt:  LALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSK

A0A5A7V727 Peptidase A12.2e-2760.5Show/hide
Query:  EVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELR
        EV KV SC VC  LG HN QC ELK+V+ + GFRRNDSQSNTYN G     I                  +AK SEHT+ STG +KNDIEIMKASIFEL 
Subjt:  EVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELR

Query:  DKLNQLATHVLKTEGKGKL
        DKLNQLAT++LK EGKGKL
Subjt:  DKLNQLATHVLKTEGKGKL

A0A5A7VEJ8 Uncharacterized protein1.5e-2861.11Show/hide
Query:  MGGFRRNDSQSNTYNF----------------------------GTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD
        MGGFRRNDSQSNTYNF                            GTY+EEI+ KLALSSNS K +FEKN+ K SE T+ ST A+KNDIEIMKASI EL D
Subjt:  MGGFRRNDSQSNTYNF----------------------------GTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD

Query:  KLNQLATHVLKTEGKGKLSAQPNHAN
        KLNQLATHV+K E K KL AQPNHAN
Subjt:  KLNQLATHVLKTEGKGKLSAQPNHAN

A0A5D3BTM3 Uncharacterized protein1.8e-2159.81Show/hide
Query:  ELKKVNFMGGFRRNDSQSNTYNFGTYVE-EIVFKLALSSNSFKTNF-EKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLS
        ELK V+ MGG +RNDSQ+NTYN G     ++ ++      +  ++F   + AK SEHT+ STG +KNDIEIMKASIFEL DKLNQLAT VLKTEGK KL 
Subjt:  ELKKVNFMGGFRRNDSQSNTYNFGTYVE-EIVFKLALSSNSFKTNF-EKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRDKLNQLATHVLKTEGKGKLS

Query:  AQPNHAN
         QPNHAN
Subjt:  AQPNHAN

A0A5D3DVM3 Uncharacterized protein1.5e-2861.11Show/hide
Query:  MGGFRRNDSQSNTYNF----------------------------GTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD
        MGGFRRNDSQSNTYNF                            GTY+EEI+ KLALSSNS K +FEKN+ K SE T+ ST A+KNDIEIMKASI EL D
Subjt:  MGGFRRNDSQSNTYNF----------------------------GTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIMKASIFELRD

Query:  KLNQLATHVLKTEGKGKLSAQPNHAN
        KLNQLATHV+K E K KL AQPNHAN
Subjt:  KLNQLATHVLKTEGKGKLSAQPNHAN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAACAAGTGAATTTACTAACTAAACTTTTTACTTCTTTTGTCAAGGGGGAGGTTTCTAAAGTCGCCTCATGTAGAGTTTGTGGCTTACTAGGCCACCACAATGG
TCAATGCTCGGAGCTTAAAAAGGTAAATTTCATGGGAGGTTTTAGAAGAAATGATTCACAGAGTAACACCTACAACTTTGGTACGTACGTAGAGGAGATTGTCTTCAAGT
TAGCTCTTAGCTCCAATAGTTTTAAAACTAATTTTGAGAAAAATATAGCTAAATTTAGTGAGCATACTATTAAATCAACTGGAGCCATAAAAAATGACATAGAAATCATG
AAAGCATCCATTTTTGAGTTAAGAGATAAGCTTAATCAATTAGCAACACATGTTCTTAAAACGGAAGGGAAGGGCAAACTTTCTGCCCAACCCAACCATGCAAATGTGAG
TGCTATTACTTTGAGAAGTAGCAAAATTTTGAATAAAAATGATGATTGTTTTCAAAGACTTAGGATTAAATGGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAACAAGTGAATTTACTAACTAAACTTTTTACTTCTTTTGTCAAGGGGGAGGTTTCTAAAGTCGCCTCATGTAGAGTTTGTGGCTTACTAGGCCACCACAATGG
TCAATGCTCGGAGCTTAAAAAGGTAAATTTCATGGGAGGTTTTAGAAGAAATGATTCACAGAGTAACACCTACAACTTTGGTACGTACGTAGAGGAGATTGTCTTCAAGT
TAGCTCTTAGCTCCAATAGTTTTAAAACTAATTTTGAGAAAAATATAGCTAAATTTAGTGAGCATACTATTAAATCAACTGGAGCCATAAAAAATGACATAGAAATCATG
AAAGCATCCATTTTTGAGTTAAGAGATAAGCTTAATCAATTAGCAACACATGTTCTTAAAACGGAAGGGAAGGGCAAACTTTCTGCCCAACCCAACCATGCAAATGTGAG
TGCTATTACTTTGAGAAGTAGCAAAATTTTGAATAAAAATGATGATTGTTTTCAAAGACTTAGGATTAAATGGACTTGA
Protein sequenceShow/hide protein sequence
MKEQVNLLTKLFTSFVKGEVSKVASCRVCGLLGHHNGQCSELKKVNFMGGFRRNDSQSNTYNFGTYVEEIVFKLALSSNSFKTNFEKNIAKFSEHTIKSTGAIKNDIEIM
KASIFELRDKLNQLATHVLKTEGKGKLSAQPNHANVSAITLRSSKILNKNDDCFQRLRIKWT