CuGenDBv2

Gene ID	IVF0024879
Organism	Cucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Genome location	chr12:7961939..7962487
RNA-Seq Expression	IVF0024879
Synteny	IVF0024879
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037620.1 Gag-pro-like protein [Cucumis melo var. makuwa]

1.58e-119

89.56

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQSSNPIQDTDDPIYP GFTLYHMN+PQSQTTQHY+P NPLYVVPPIVP +EHLEA+AKIQDMGQN+NTPAKQKLDVLE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVPGLIIPAK KVP+FDKYDGST PRSH+IMYCRKMA +INND+LLVHCFQDSLTG ASRWYIQLDNAHIHV
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

KAA0066747.1 Gag-pro-like protein [Cucumis melo var. makuwa]

1.30e-113

86.81

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGK  VVVDTAQSSNPIQ+TDDPIYPPGFT YHM +PQSQTTQHYVP NPLYVVPPIVP IEHLEA+AKIQDMG N+NT AKQKLDVLE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNID TQLCLVP LIIPAK KVP+FDKYDGST PRSH+IMYCRKMA HINND+LLVHCFQDSLTG A+RWYIQLDNAHIHV
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

TYK20949.1 uncharacterized protein E5676_scaffold284G00970 [Cucumis melo var. makuwa]

3.72e-113

97.7

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ
        YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLA+R  +Q
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ

XP_008463191.1 PREDICTED: uncharacterized protein LOC103501400 [Cucumis melo]

4.54e-117

88.46

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQ SNPIQDTDDPIYPPGFT YHMN+PQSQTTQHY+P NPLYVVPPIVP +EHLEA+AKIQDMGQNKNT AKQKLD+LE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVPGLIIPAK KVP+FDKYDGST PRSH+IMYCRKMA HINND+LLVHCFQDSL G ASRWYIQLDNAHIHV
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

XP_008465589.1 PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo]

7.40e-115

89.01

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQSSNPIQDTDD IYPPGFT YHMN+PQSQT QHYVP NPLYVVPPIVP IEHLEA+AKIQDMGQN+NTPAKQKLDVLE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVP LIIPAK KVP+FDKYDGST PRSH+IMYCRKMA HINND+LLVHCFQDSLTG ASRWYIQLDNAHIH+
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2M2 Gag-pro-like protein

4.2e-93

89.56

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQSSNPIQDTDDPIYP GFTLYHMN+PQSQTTQHY+P NPLYVVPPIVP +EHLEA+AKIQDMGQN+NTPAKQKLDVLE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVPGLIIPAK KVP+FDKYDGST PRSH+IMYCRKMA +INND+LLVHCFQDSLTG ASRWYIQLDNAHIHV
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

A0A5A7TFM3 RNase H domain-containing protein

2.9e-94

97.7

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ
        YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLA+R  +Q
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ

A0A5A7V8B6 Gag-pro-like protein

1.0e-91

88.46

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQ SNPIQDTDDPIYPPGFT YHMN+PQSQTTQHY+P NPLYVVPPIVP +EHLEA+AKIQDMGQNKNT AKQKLD+LE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVPGLIIPAK KVP+FDKYDGST PRSH+IMYCRKMA HINND+LLVHCFQDSL G ASRWYIQLDNAHIHV
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

A0A5D3CXD6 Retrotrans_gag domain-containing protein

3.5e-92

89.56

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKV VDTAQSSNPIQDTDD IYPPGFT YHMN+PQSQTTQHYVP NPLYVVPPIVP IEHLEA+AKIQDMGQN+NTPAKQKLDVLE+RLR IEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV
        YGNIDATQLCLVP LIIPAK KVP+FDKYDGST PRSH+IMYCRKMA HINND+LLVHCFQDSLTG ASRWYIQLDNAHIH+
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

A0A5D3DCC9 Uncharacterized protein

2.9e-94

97.7

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Query:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
        MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV
Subjt:  MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDV

Query:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ
        YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLA+R  +Q
Subjt:  YGNIDATQLCLVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGGAAAGGGAAAGTCGTTGTAGATACAGCACAATCAAGCAATCCAATTCAAGACACAGATGATCCCATTTATCCTCCAGGATTCACTCTATACCACATGAATATTCC
GCAGTCTCAAACCACTCAACACTATGTTCCTATGAATCCGTTGTATGTTGTTCCACCCATTGTTCCAAATATAGAACATTTGGAAGCTCGGGCTAAAATTCAAGACATGG
GACAAAACAAGAACACTCCGGCTAAGCAAAAGTTAGATGTTTTGGAAAAAAGGTTGCGAACAATTGAAGGGACTGATGTCTATGGGAATATAGATGCAACACAATTGTGC
TTAGTGCCAGGCTTGATCATTCCAGCAAAGCTTAAAGTTCCTAAATTCGATAAATATGATGGATCAACGTTTCCAAGGAGTCATATTATAATGTACTGCAGAAAGATGGC
AACACATATTAATAATGATAGATTGCTAGTCCATTGCTTCCAGGATAGCTTGACTGGGCTAGCTAGTCGATGGTATATTCAATTAGATAATGCACACATTCACGTTTGA

mRNA sequence

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Protein sequence

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MGKGKVVVDTAQSSNPIQDTDDPIYPPGFTLYHMNIPQSQTTQHYVPMNPLYVVPPIVPNIEHLEARAKIQDMGQNKNTPAKQKLDVLEKRLRTIEGTDVYGNIDATQLC
LVPGLIIPAKLKVPKFDKYDGSTFPRSHIIMYCRKMATHINNDRLLVHCFQDSLTGLASRWYIQLDNAHIHV

IVF0024879 (gene) of Melon (IVF77) v1 genome