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IVF0024929 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024929
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhenylalanyl-tRNA synthetase beta subunit
Genome locationchr02:21178576..21179018
RNA-Seq ExpressionIVF0024929
SyntenyIVF0024929
Gene Ontology termsGO:0006432 - phenylalanyl-tRNA aminoacylation (biological process)
GO:0009328 - phenylalanine-tRNA ligase complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004826 - phenylalanine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR041616 - Phenylalanyl tRNA synthetase beta chain, core domain
IPR045060 - Phenylalanine-tRNA ligase, class IIc, beta subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058031.1 putative phenylalanine--tRNA ligase beta subunit isoform X2 [Cucumis melo var. makuwa]2.04e-43100Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

XP_004138205.1 phenylalanine--tRNA ligase beta subunit, cytoplasmic [Cucumis sativus]2.99e-4297.3Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEVVG PFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

XP_022921551.1 phenylalanine--tRNA ligase beta subunit, cytoplasmic-like [Cucurbita moschata]7.73e-3886.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GA FV+VGD+TGYYIKCSDNPEFLTGRQAHIIYKG+KIGTFGIVHPEVL NFDIPDPCS VE+N+ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

XP_022988471.1 phenylalanine--tRNA ligase beta subunit, cytoplasmic-like [Cucurbita maxima]7.73e-3886.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GA FV+VGD+TGYYIKCSDNPEFLTGRQAHIIYKG+KIGTFGIVHPEVL NFDIPDPCS VE+N+ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

XP_023516422.1 phenylalanine--tRNA ligase beta subunit, cytoplasmic-like [Cucurbita pepo subsp. pepo]7.73e-3886.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GA FV+VGD+TGYYIKCSDNPEFLTGRQAHIIYKG+KIGTFGIVHPEVL NFDIPDPCS VE+N+ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

TrEMBL top hitse value%identityAlignment
A0A0A0LPD2 Phenylalanyl-tRNA synthetase beta subunit2.8e-3597.3Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEVVG PFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

A0A5A7UX07 Phenylalanyl-tRNA synthetase beta subunit3.3e-36100Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

A0A6J1E1P8 Phenylalanyl-tRNA synthetase beta subunit1.1e-3186.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GA FV+VGD+TGYYIKCSDNPEFLTGRQAHIIYKG+KIGTFGIVHPEVL NFDIPDPCS VE+N+ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

A0A6J1JD38 Phenylalanyl-tRNA synthetase beta subunit1.1e-3186.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GA FV+VGD+TGYYIKCSDNPEFLTGRQAHIIYKG+KIGTFGIVHPEVL NFDIPDPCS VE+N+ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

A0A6J1JMD2 Phenylalanyl-tRNA synthetase beta subunit4.1e-3186.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+GAPFVSVG +TGYYIKCSDNPEFLTGRQAHIIY GKKIGTFGIVHPEVL NFDIPDPCS VE+++ESFL
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

SwissProt top hitse value%identityAlignment
Q19713 Phenylalanine--tRNA ligase beta subunit3.3e-0946.77Show/hide
Query:  DDTGYYIKCSDNPEFLTGRQAHII-YKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        D TGYYI+  +N  +  GR A II  KG  +G  G +HPEV+ +F +  PC  VE+N+E FL
Subjt:  DDTGYYIKCSDNPEFLTGRQAHII-YKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

Q5R7F7 Phenylalanine--tRNA ligase beta subunit3.0e-1042.62Show/hide
Query:  DDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        D  GY IK S+ P F  GR A I  +G+ +G  G++HP+V+  F++  PCS +E+N+  FL
Subjt:  DDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

Q9NSD9 Phenylalanine--tRNA ligase beta subunit3.0e-1042.62Show/hide
Query:  DDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        D  GY IK S+ P F  GR A I  +G+ +G  G++HP+V+  F++  PCS +E+N+  FL
Subjt:  DDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

Q9SGE9 Phenylalanine--tRNA ligase beta subunit, cytoplasmic2.4e-2056.79Show/hide
Query:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+  PF       V + +  GYY+K S  PEFL GRQA II +GK IG FGIVHPEVL NFDIPDPCS +E+++E+ L
Subjt:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

Q9VCA5 Phenylalanine--tRNA ligase beta subunit4.1e-1236.49Show/hide
Query:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +M+++  P+ S     GYY++ +++P +  GR A+++Y G  IG  G++HP VL+ F++  PCS VE  +E F+
Subjt:  MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

Arabidopsis top hitse value%identityAlignment
AT1G72550.1 tRNA synthetase beta subunit family protein1.7e-2156.79Show/hide
Query:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL
        +MEV+  PF       V + +  GYY+K S  PEFL GRQA II +GK IG FGIVHPEVL NFDIPDPCS +E+++E+ L
Subjt:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL

AT1G72550.2 tRNA synthetase beta subunit family protein1.9e-1250.77Show/hide
Query:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFD
        +MEV+  PF       V + +  GYY+K S  PEFL GRQA II +GK IG FGIVHPE    F+
Subjt:  MMEVVGAPF-------VSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGTCGTGGGAGCTCCTTTTGTCTCAGTTGGCGATGATACTGGGTATTACATAAAATGTTCAGATAACCCGGAGTTTCTTACTGGTAGACAAGCTCACATCAT
TTATAAAGGAAAGAAAATTGGCACTTTCGGAATTGTTCATCCCGAGGTTTTGGAGAACTTTGACATTCCCGATCCATGTTCCTTAGTTGAAGTTAACATGGAGAGCTTTT
TATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGTCGTGGGAGCTCCTTTTGTCTCAGTTGGCGATGATACTGGGTATTACATAAAATGTTCAGATAACCCGGAGTTTCTTACTGGTAGACAAGCTCACATCAT
TTATAAAGGAAAGAAAATTGGCACTTTCGGAATTGTTCATCCCGAGGTTTTGGAGAACTTTGACATTCCCGATCCATGTTCCTTAGTTGAAGTTAACATGGAGAGCTTTT
TATAG
Protein sequenceShow/hide protein sequence
MMEVVGAPFVSVGDDTGYYIKCSDNPEFLTGRQAHIIYKGKKIGTFGIVHPEVLENFDIPDPCSLVEVNMESFL