; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

IVF0024969 (gene) of Melon (IVF77) v1 genome

Gene IDIVF0024969
OrganismCucumis melo ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:12174450..12175166
RNA-Seq ExpressionIVF0024969
SyntenyIVF0024969
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]5.12e-8188.65Show/hide
Query:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE
        G+GVVRRRGR RAYQNIQRRAQQEA +FECNM AIKFKIPKFFRKTDP+EYI+WEKEVENVF CHNF DEQKVRF VSK KDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE

Query:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
        APIDS YEFKES RKRFVPNHFQRDMAQ+LQALRQGSK VE
Subjt:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]3.80e-170100Show/hide
Query:  MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN
        MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN
Subjt:  MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN

Query:  IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR
        IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR
Subjt:  IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR

Query:  FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
        FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
Subjt:  FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]4.80e-9283.64Show/hide
Query:  MEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIP
        MEALTDRLER EIENRARERMPPPLAP M INHN+NQ EGDG DDLDDDQVTLL EPRRVGHGVVRRRG G+AYQNIQRR QQE  Q E NM AIKFKIP
Subjt:  MEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIP

Query:  KFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDS
        KFF KTDP+EYI+WEKEVENVF CHNF++EQKVRF V+K KDY QTWW KLMSRR+RNLEAPIDS
Subjt:  KFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDS
TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]1.38e-156100Show/hide
Query:  MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK
        MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK
Subjt:  MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK

Query:  FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG
        FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG
Subjt:  FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG

Query:  SKSVERLLQRDGHFDGST
        SKSVERLLQRDGHFDGST
Subjt:  SKSVERLLQRDGHFDGST
TYK10621.1 uncharacterized protein E5676_scaffold315G00990 [Cucumis melo var. makuwa]2.18e-7988.65Show/hide
Query:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE
        G+GVVRRRGR RAYQNIQRRAQQEA +FECNM AIKFKIPKFFRKTDP+EYI+WEKEVENVF CHNF DEQKVRF VSK KDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE

Query:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
        APIDS YEFKES RKRFVPNHFQRDMAQ+LQALRQGSK VE
Subjt:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
TrEMBL top hitse value%identityAlignment
A0A5A7TFU8 Retrotrans_gag domain-containing protein1.2e-6388.65Show/hide
Query:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE
        G+GVVRRRGR RAYQNIQRRAQQEA +FECNM AIKFKIPKFFRKTDP+EYI+WEKEVENVF CHNF DEQKVRF VSK KDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE

Query:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
        APIDS YEFKES RKRFVPNHFQRDMAQ+LQALRQGSK VE
Subjt:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
A0A5A7TK52 Retrotrans_gag domain-containing protein4.6e-132100Show/hide
Query:  MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN
        MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN
Subjt:  MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQN

Query:  IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR
        IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR
Subjt:  IQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKR

Query:  FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
        FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
Subjt:  FVPNHFQRDMAQELQALRQGSKSVERLLQRDGHFDGST
A0A5A7TYI0 Uncharacterized protein3.4e-7183.64Show/hide
Query:  MEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIP
        MEALTDRLER EIENRARERMPPPLAP M INHN+NQ EGDG DDLDDDQVTLL EPRRVGHGVVRRRG G+AYQNIQRR QQE  Q E NM AIKFKIP
Subjt:  MEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIP

Query:  KFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDS
        KFF KTDP+EYI+WEKEVENVF CHNF++EQKVRF V+K KDY QTWW KLMSRR+RNLEAPIDS
Subjt:  KFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDS
A0A5D3CFQ1 CCHC-type domain-containing protein1.2e-6388.65Show/hide
Query:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE
        G+GVVRRRGR RAYQNIQRRAQQEA +FECNM AIKFKIPKFFRKTDP+EYI+WEKEVENVF CHNF DEQKVRF VSK KDYA TWWDKLMSRRRRNLE
Subjt:  GHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLE

Query:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
        APIDS YEFKES RKRFVPNHFQRDMAQ+LQALRQGSK VE
Subjt:  APIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQGSKSVE
A0A5D3CHG3 Retrotrans_gag domain-containing protein2.1e-121100Show/hide
Query:  MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK
        MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK
Subjt:  MISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEASQFECNMRAIK

Query:  FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG
        FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG
Subjt:  FKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG

Query:  SKSVERLLQRDGHFDGST
        SKSVERLLQRDGHFDGST
Subjt:  SKSVERLLQRDGHFDGST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G07350.1 unknown protein1.9e-0530.26Show/hide
Query:  FFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRF
        FF+ +  ++Y++WEK ++  F   NF  E +    +S L   A  WW + +  R    E PI  W + KE +R ++
Subjt:  FFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATCAAAATGACGAAGTACAATTAAGAGAGGCACAACAAGGAGTTATTGCACGAATGATTAGTAATATGGAAGCATTGACAGATCGATTGGAGAGGTTCGAGAT
TGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACCACCTATGCTAATTAACCATAATGACAACCAAGATGAGGGTGATGGTTCTGATGACTTAGACGATGACC
AAGTTACATTATTGGGGGAGCCGAGACGTGTGGGACATGGAGTAGTTAGAAGAAGAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCATCT
CAATTTGAGTGTAACATGAGAGCCATCAAATTTAAAATTCCAAAATTCTTCAGGAAAACTGATCCAAAGGAGTACATTAAGTGGGAAAAAGAGGTGGAGAATGTGTTTCC
TTGCCATAATTTTACTGACGAGCAAAAGGTTAGATTTTATGTTTCCAAATTGAAGGATTATGCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGAAGAAGGAATCTCG
AAGCACCAATTGATTCGTGGTATGAATTCAAAGAATCTATGAGGAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAGAACTTCAAGCATTGAGGCAAGGC
AGCAAGTCGGTGGAAAGACTATTACAAAGAGATGGACACTTTGATGGATCGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATCAAAATGACGAAGTACAATTAAGAGAGGCACAACAAGGAGTTATTGCACGAATGATTAGTAATATGGAAGCATTGACAGATCGATTGGAGAGGTTCGAGAT
TGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACCACCTATGCTAATTAACCATAATGACAACCAAGATGAGGGTGATGGTTCTGATGACTTAGACGATGACC
AAGTTACATTATTGGGGGAGCCGAGACGTGTGGGACATGGAGTAGTTAGAAGAAGAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCATCT
CAATTTGAGTGTAACATGAGAGCCATCAAATTTAAAATTCCAAAATTCTTCAGGAAAACTGATCCAAAGGAGTACATTAAGTGGGAAAAAGAGGTGGAGAATGTGTTTCC
TTGCCATAATTTTACTGACGAGCAAAAGGTTAGATTTTATGTTTCCAAATTGAAGGATTATGCTCAAACTTGGTGGGACAAATTAATGTCCAGAAGAAGAAGGAATCTCG
AAGCACCAATTGATTCGTGGTATGAATTCAAAGAATCTATGAGGAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAGAACTTCAAGCATTGAGGCAAGGC
AGCAAGTCGGTGGAAAGACTATTACAAAGAGATGGACACTTTGATGGATCGACTTGA
Protein sequenceShow/hide protein sequence
MENQNDEVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDDLDDDQVTLLGEPRRVGHGVVRRRGRGRAYQNIQRRAQQEAS
QFECNMRAIKFKIPKFFRKTDPKEYIKWEKEVENVFPCHNFTDEQKVRFYVSKLKDYAQTWWDKLMSRRRRNLEAPIDSWYEFKESMRKRFVPNHFQRDMAQELQALRQG
SKSVERLLQRDGHFDGST